Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 9.8e-74 280.0 140 100.0
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.1e-29 133.7 119 53.8
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.1e-29 133.7 124 51.6
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.9e-29 132.9 119 53.8
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 2.8e-28 129.0 125 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.2e-28 127.9 118 54.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 8.1e-28 127.5 124 50.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 8.1e-28 127.5 124 49.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.4e-27 126.7 124 48.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.8e-27 126.3 118 53.4
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.8e-27 126.3 118 49.2
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.4e-27 125.9 124 50.0
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.4e-27 125.9 118 50.0
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 3.1e-27 125.6 118 50.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.1e-27 125.6 118 52.5
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 3.1e-27 125.6 124 49.2
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.0e-27 125.2 124 49.2
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 4.0e-27 125.2 118 51.7
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 4.0e-27 125.2 118 53.4
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.3e-27 124.8 124 48.4
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 6.9e-27 124.4 118 51.7
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 6.9e-27 124.4 118 50.8
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 6.9e-27 124.4 118 50.8
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 49.2
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 52.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 49.2
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 9.0e-27 124.0 118 51.7
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.2e-26 123.6 118 49.2
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.2e-26 123.6 118 50.8
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.2e-26 123.6 117 50.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.5e-26 123.2 118 50.0
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.0e-26 122.9 118 50.8
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 2.0e-26 122.9 118 51.7
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.6e-26 122.5 118 50.0
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 2.6e-26 122.5 118 48.3
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 2.6e-26 122.5 118 50.8
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 3.4e-26 122.1 119 47.9
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 4.5e-26 121.7 118 49.2
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.5e-26 121.7 118 50.0
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 4.5e-26 121.7 118 50.8
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.5e-26 121.7 118 52.5
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 5.8e-26 121.3 118 49.2
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 50.0
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 50.8
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 50.8
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 50.8
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 50.8
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 50.8
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 7.6e-26 120.9 118 48.3
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.9e-26 120.6 118 50.8
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.3e-25 120.2 124 46.8
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.3e-25 120.2 118 49.2
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.3e-25 120.2 118 49.2
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.7e-25 119.8 118 50.8
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.7e-25 119.8 118 49.2
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 2.2e-25 119.4 124 46.8
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.2e-25 119.4 118 50.0
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.2e-25 119.4 118 49.2
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.9e-25 119.0 118 48.3
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 2.9e-25 119.0 118 48.3
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 2.9e-25 119.0 118 49.2
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 2.9e-25 119.0 126 49.2
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.9e-25 119.0 118 49.2
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.8e-25 118.6 118 49.2
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 3.8e-25 118.6 118 49.2
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.8e-25 118.6 118 49.2
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 3.8e-25 118.6 118 49.2
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 3.8e-25 118.6 118 49.2
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.8e-25 118.6 119 52.1
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 4.9e-25 118.2 118 48.3
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 4.9e-25 118.2 118 48.3
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 6.4e-25 117.9 124 45.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 6.4e-25 117.9 139 43.2
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 6.4e-25 117.9 118 48.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.4e-25 117.9 117 48.7
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.4e-25 117.9 117 48.7
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 8.4e-25 117.5 118 47.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 8.4e-25 117.5 118 49.2
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.1e-24 117.1 118 48.3
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.1e-24 117.1 118 48.3
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.1e-24 117.1 118 47.5
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.1e-24 117.1 118 49.2
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.1e-24 117.1 118 50.8
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.4e-24 116.7 118 50.0
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.4e-24 116.7 118 48.3
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.9e-24 116.3 118 48.3
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.9e-24 116.3 118 47.5
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.9e-24 116.3 118 47.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.9e-24 116.3 118 48.3
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.4e-24 115.9 118 47.5
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 2.4e-24 115.9 118 47.5
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 3.2e-24 115.5 118 46.6
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 3.2e-24 115.5 118 47.5
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 3.2e-24 115.5 118 48.3
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 3.2e-24 115.5 118 47.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 4.2e-24 115.2 118 47.5
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 5.5e-24 114.8 118 46.6
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.5e-24 114.8 118 46.6
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.5e-24 114.8 117 46.2
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.5e-24 114.8 117 46.2
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 7.1e-24 114.4 117 47.0
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.3e-24 114.0 118 48.3
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.2e-23 113.6 118 48.3
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.6e-23 113.2 124 45.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.6e-23 113.2 118 48.3
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.5e-23 112.1 118 47.5
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 4.6e-23 111.7 118 48.3
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-22 110.5 117 47.0
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 6.7e-22 107.8 93 55.9
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.1e-20 102.8 91 56.0
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.0e-19 98.6 101 47.5
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.6e-18 95.9 121 43.8
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 3.4e-18 95.5 118 42.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.8e-18 94.7 98 46.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.7e-17 93.2 76 56.6
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.5e-16 88.2 93 48.4
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.7e-14 80.9 93 43.0
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.6e-10 69.3 123 33.3
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.6e-10 69.3 68 48.5
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 3.4e-10 68.9 118 33.1
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 1.7e-09 66.6 79 45.6
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.2e-07 60.5 39 66.7


User provided reference genes

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