Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 3.8e-196 688.0 342 100.0
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 2.4e-73 280.0 301 53.2
Aqoxy3G01134 Aquilegia oxysepala HOM05D002965 ORTHO05D010536 4.5e-48 196.1 186 58.1
unitig_87.g27935 Utricularia gibba HOM05D002965 ORTHO05D010183 9.5e-46 188.3 149 67.8
Cpa.g.sc263.24 Carica papaya HOM05D002965 ORTHO05D011068 2.4e-41 173.7 102 84.3
SabraMtG0009900 Salix brachista HOM05D002965 ORTHO05D010536 7.8e-40 168.7 178 53.4
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 6.6e-39 165.6 89 89.9
Peaxi162Scf00863g00003 Petunia axillaris HOM05D002965 ORTHO05D011068 1.5e-38 164.5 89 88.8
Nitab4.5_0002558g0110 Nicotiana tabacum HOM05D002965 ORTHO05D011068 8.0e-37 158.7 89 85.4
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.1e-36 158.3 183 49.2
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.1e-36 158.3 183 49.2
Solyc06g074585.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 2.3e-36 157.1 183 49.2
Aa31csc822G20 Aethionema arabicum HOM05D002965 ORTHO05D011068 3.1e-36 156.8 182 53.3
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 3.1e-36 156.8 175 49.7
PGSC0003DMG400010573 Solanum tuberosum HOM05D002965 ORTHO05D010536 4.0e-36 156.4 183 48.6
Nitab4.5_0001761g0080 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.2e-35 154.8 135 60.0
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 1.5e-35 154.5 173 49.7
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 1.5e-35 154.5 173 49.7
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 1.7e-34 151.0 184 48.4
Nitab4.5_0002418g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 4.1e-33 146.4 128 60.9
Solyc00g500114.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 9.2e-33 145.2 129 59.7
Nitab4.5_0001796g0200 Nicotiana tabacum HOM05D002965 ORTHO05D011068 2.1e-32 144.1 81 84.0
SGA_v2.0_scaffold479G52282 Striga asiatica HOM05D002965 ORTHO05D010183 2.7e-32 143.7 92 78.3
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 4.6e-32 142.9 142 53.5
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 4.6e-32 142.9 142 53.5
Nitab4.5_0000172g1470 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.0e-31 141.7 89 77.5
Sopen06g007640 Solanum pennellii HOM05D002965 ORTHO05D012151 4.3e-30 136.3 259 38.2
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 1.6e-29 134.4 139 55.4
Eucgr.I01860 Eucalyptus grandis HOM05D002965 ORTHO05D010536 2.1e-29 134.0 170 45.9
Lj6A7T8 Lonicera japonica HOM05D002965 ORTHO05D010536 2.1e-29 134.0 188 44.1
ECA246G1890 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.2e-29 132.5 81 79.0
Nitab4.5_0005831g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.2e-27 128.3 167 49.1
HanXRQMTg0579151 Helianthus annuus HOM05D002965 ORTHO05D010536 9.9e-27 125.2 148 48.6
PGR028G0005 Punica granatum HOM05D002965 ORTHO05D010536 9.9e-27 125.2 108 59.3
PGR069G0002 Punica granatum HOM05D002965 ORTHO05D010536 9.9e-27 125.2 108 59.3
PGR069G0012 Punica granatum HOM05D002965 ORTHO05D010536 9.9e-27 125.2 108 59.3
PGR069G0018 Punica granatum HOM05D002965 ORTHO05D010536 9.9e-27 125.2 108 59.3
PGR071G0002 Punica granatum HOM05D002965 ORTHO05D010536 9.9e-27 125.2 108 59.3
EL10Ac5g12181 Beta vulgaris HOM05D002965 ORTHO05D010536 6.4e-26 122.5 79 78.5
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 6.4e-26 122.5 97 60.8
Glyma.17G186200 Glycine max HOM05D002965 ORTHO05D010536 1.9e-25 120.9 124 51.6
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 2.4e-25 120.6 120 54.2
Cfa022987 Carpinus fangiana HOM05D002965 ORTHO05D010183 9.2e-25 118.6 153 49.0
ATMG01010 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 1.2e-24 118.2 117 52.1
Aa31csc464G20 Aethionema arabicum HOM05D000743 ORTHO05D000580 2.7e-24 117.1 153 45.8
Hma1.2p1_0290F.1_g114710 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 6.0e-24 115.9 134 49.3
Hma1.2p1_0290F.1_g114715 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 6.0e-24 115.9 134 49.3
ECA003G0005 Erigeron canadensis HOM05D002965 ORTHO05D000580 1.0e-23 115.2 156 45.5
ECA039G0005 Erigeron canadensis HOM05D002965 ORTHO05D010536 1.7e-23 114.4 154 45.5
Nitab4.5_0005613g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 3.0e-23 113.6 89 64.0
CARHR283260 Cardamine hirsuta HOM05D002965 ORTHO05D010536 5.1e-23 112.8 108 53.7
Gorai.013G137600 Gossypium raimondii HOM05D002965 ORTHO05D010536 2.5e-22 110.5 137 51.8
HanXRQChr07g0188971 Helianthus annuus HOM05D002965 ORTHO05D010536 9.5e-22 108.6 166 45.8
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 4.7e-21 106.3 135 46.7
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-20 104.0 98 54.1
Gohir.D06G053851 Gossypium hirsutum HOM05D002965 ORTHO05D010536 5.2e-20 102.8 79 65.8
Potri.007G062262 Populus trichocarpa HOM05D002965 ORTHO05D010536 1.2e-19 101.7 73 67.1
Sed0028066 Sechium edule HOM05D002965 ORTHO05D010183 9.9e-19 98.6 106 51.9
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-18 97.1 114 45.6
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-18 97.1 114 45.6
Nitab4.5_0000580g0190 Nicotiana tabacum HOM05D002965 ORTHO05D011068 3.8e-18 96.7 57 82.5
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.9e-18 96.3 90 57.8
Ah.04g159760 Amaranthus hybridus HOM05D003103 ORTHO05D011068 3.2e-17 93.6 99 53.5
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 9.2e-17 92.0 73 60.3
PGSC0003DMG400040498 Solanum tuberosum HOM05D002965 ORTHO05D010514 1.6e-16 91.3 127 44.1
Dinv06704 Davidia involucrata HOM05D002965 ORTHO05D010183 2.7e-16 90.5 66 72.7
Peaxi162Scf02014g00001 Petunia axillaris HOM05D016050 ORTHO05D011068 1.7e-15 87.8 94 54.3
Solyc11g045430.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 3.9e-15 86.7 73 57.5
SHI27034 Sapria himalayana HOM05D023343 ORTHO05D011068 1.1e-14 85.1 54 72.2
TPR.G28262 Trifolium pratense HOM05D002965 ORTHO05D010536 1.9e-14 84.3 147 38.1
CsaV3_UNG209190 Cucumis sativus L. HOM05D016050 ORTHO05D011068 2.5e-14 84.0 48 83.3
HanXRQChr10g0297161 Helianthus annuus HOM05D002965 ORTHO05D010536 2.5e-14 84.0 79 53.2
CAN.G362.38 Capsicum annuum HOM05D002965 ORTHO05D010994 3.3e-14 83.6 137 38.0
VMungo0251G1451 Vigna mungo HOM05D002965 ORTHO05D010536 3.3e-14 83.6 77 54.5
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 7.3e-14 82.4 69 60.9
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 9.6e-14 82.0 68 55.9
Psat0s7112g0120 Pisum sativum HOM05D002965 ORTHO05D010536 9.6e-14 82.0 95 46.3
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.6e-13 81.3 84 56.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.4e-12 78.2 47 78.7
HanXRQChr07g0189021 Helianthus annuus HOM05D002965 ORTHO05D010536 1.8e-12 77.8 96 49.0
RhsimMtG0001000 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.8e-12 77.8 45 86.7
BcaC05g26887 Brassica carinata HOM05D002965 ORTHO05D010536 2.4e-12 77.4 62 58.1
BraSC77t46663Z Brassica rapa HOM05D002965 ORTHO05D010536 3.1e-12 77.0 70 60.0
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 4.0e-12 76.6 61 60.7
CAN.G1542.11 Capsicum annuum HOM05D002965 ORTHO05D011068 4.0e-12 76.6 96 45.8
HanXRQChr07g0188961 Helianthus annuus HOM05D002965 ORTHO05D010536 5.3e-12 76.3 113 47.8
Nitab4.5_0002653g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 3.4e-11 73.6 55 70.9
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 4.4e-11 73.2 69 56.5
Solyc00g025300.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 5.8e-11 72.8 48 70.8
ClCG01G010190 Citrullus lanatus HOM05D042035 ORTHO05D016641 7.6e-11 72.4 45 73.3
HanXRQChr02g0035251 Helianthus annuus HOM05D002965 ORTHO05D010536 7.6e-11 72.4 58 60.3
Nitab4.5_0001763g0110 Nicotiana tabacum HOM05D002965 ORTHO05D011068 7.6e-11 72.4 42 83.3
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.3e-10 71.6 82 50.0
arahy.Tifrunner.gnm1.ann1.LH5L6M Arachis hypogaea HOM05D002965 ORTHO05D010536 1.3e-10 71.6 73 43.8
Nitab4.5_0000886g0150 Nicotiana tabacum HOM05D002965 ORTHO05D011068 2.9e-10 70.5 42 81.0
arahy.Tifrunner.gnm1.ann1.S21A07 Arachis hypogaea HOM05D008923 ORTHO05D011423 4.9e-10 69.7 59 61.0
Peaxi162Scf00348g00058 Petunia axillaris HOM05D002965 ORTHO05D010994 6.4e-10 69.3 115 39.1
SHI25680 Sapria himalayana HOM05D022652 ORTHO05D011068 2.4e-09 67.4 45 68.9
Ah.13g067000 Amaranthus hybridus HOM05D008690 ORTHO05D010874 1.6e-08 64.7 40 77.5
Aa31csc1081G40 Aethionema arabicum HOM05D002965 ORTHO05D010536 2.7e-08 63.9 54 55.6
HanXRQChr05g0134431 Helianthus annuus HOM05D002965 ORTHO05D010536 4.6e-08 63.2 63 50.8
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 3.0e-07 60.5 111 34.2
Nitab4.5_0002493g0010 Nicotiana tabacum HOM05D002965 ORTHO05D010536 3.9e-07 60.1 42 57.1
HanXRQChr11g0327841 Helianthus annuus HOM05D002965 ORTHO05D010536 6.6e-07 59.3 63 49.2
Haze_01424 Corylus avellana HOM05D022652 ORTHO05D011068 8.7e-07 58.9 39 71.8
Haze_01425 Corylus avellana HOM05D022652 ORTHO05D011068 8.7e-07 58.9 39 71.8


User provided reference genes

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