Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.3e-91 339.0 182 100.0
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.1e-85 320.1 171 100.0
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 4.4e-74 281.6 169 88.8
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 3.6e-68 261.9 170 84.1
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 8.0e-68 260.8 170 84.7
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 6.8e-67 257.7 170 83.5
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 6.3e-65 251.1 169 81.1
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 8.3e-65 250.8 169 81.7
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.3e-62 243.4 172 77.3
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 1.3e-62 243.4 169 78.1
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.7e-62 243.0 172 77.9
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 2.9e-62 242.3 169 77.5
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 3.8e-62 241.9 172 75.6
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 5.0e-62 241.5 169 78.7
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 8.6e-62 240.7 169 78.7
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 1.5e-61 240.0 169 76.9
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 1.9e-61 239.6 172 75.6
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 3.3e-61 238.8 172 74.4
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 5.6e-61 238.0 172 75.0
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 5.6e-61 238.0 169 74.6
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 9.5e-61 237.3 172 73.8
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 1.2e-60 236.9 172 74.4
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 1.0e-59 233.8 172 74.4
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 1.0e-59 233.8 172 72.1
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 1.4e-59 233.4 172 74.4
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 3.0e-59 232.3 172 74.4
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 4.0e-59 231.9 172 73.8
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 1.4e-56 223.4 172 69.8
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 2.4e-56 222.6 171 67.8
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 2.4e-56 222.6 171 67.8
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 4.1e-56 221.9 171 67.3
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 5.4e-56 221.5 171 67.8
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 7.0e-56 221.1 171 67.3
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 5.9e-55 218.0 170 66.5
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 7.8e-55 217.6 169 65.7
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.0e-54 217.2 169 65.7
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 1.0e-54 217.2 173 67.6
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 3.0e-54 215.7 169 65.1
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 5.0e-54 214.9 170 66.5
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 5.0e-54 214.9 170 66.5
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 8.6e-54 214.2 170 65.9
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 8.6e-54 214.2 169 66.3
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 8.6e-54 214.2 169 65.1
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.5e-53 213.4 171 66.1
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 1.5e-53 213.4 170 65.3
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 1.5e-53 213.4 171 65.5
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 1.9e-53 213.0 169 64.5
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 1.9e-53 213.0 172 67.4
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 2.5e-53 212.6 170 64.7
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 4.3e-53 211.8 169 63.3
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 4.3e-53 211.8 169 64.5
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 4.3e-53 211.8 170 65.9
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 7.3e-53 211.1 169 65.7
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 1.6e-52 209.9 175 63.4
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 2.8e-52 209.1 169 61.5
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 2.8e-52 209.1 169 61.5
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 2.8e-52 209.1 169 61.5
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 3.6e-52 208.8 172 65.7
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 3.6e-52 208.8 172 66.3
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 4.7e-52 208.4 169 61.5
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 4.7e-52 208.4 169 63.9
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 4.7e-52 208.4 174 65.5
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 6.2e-52 208.0 169 61.5
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 6.2e-52 208.0 171 63.7
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 6.2e-52 208.0 169 63.9
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 6.2e-52 208.0 172 66.9
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 8.0e-52 207.6 171 64.3
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.0e-51 207.2 169 64.5
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.4e-51 206.8 169 63.9
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 1.4e-51 206.8 170 65.3
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 2.3e-51 206.1 169 62.7
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 2.3e-51 206.1 171 65.5
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 2.3e-51 206.1 172 65.1
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 3.1e-51 205.7 170 64.1
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 4.0e-51 205.3 169 62.7
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 4.0e-51 205.3 170 63.5
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 4.0e-51 205.3 171 64.9
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 5.2e-51 204.9 173 64.2
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 5.2e-51 204.9 171 62.0
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 5.2e-51 204.9 171 63.7
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 5.2e-51 204.9 171 65.5
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 6.8e-51 204.5 171 64.9
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 6.8e-51 204.5 171 64.9
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 8.9e-51 204.1 171 62.6
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 8.9e-51 204.1 169 62.1
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 8.9e-51 204.1 169 62.1
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 8.9e-51 204.1 169 62.1
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 8.9e-51 204.1 172 64.5
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 8.9e-51 204.1 172 64.5
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 8.9e-51 204.1 171 62.0
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 8.9e-51 204.1 171 63.7
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 8.9e-51 204.1 171 63.7
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 8.9e-51 204.1 174 63.8
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 8.9e-51 204.1 172 64.0
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.2e-50 203.8 173 63.6
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 1.2e-50 203.8 171 61.4
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 1.2e-50 203.8 170 62.9
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.5e-50 203.4 171 63.7
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 1.5e-50 203.4 169 65.1
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 2.0e-50 203.0 173 63.6
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 2.6e-50 202.6 173 60.1
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 2.6e-50 202.6 171 61.4
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 3.4e-50 202.2 171 62.6
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 3.4e-50 202.2 174 64.4
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 3.4e-50 202.2 171 63.7
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 4.4e-50 201.8 172 60.5
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 4.4e-50 201.8 171 61.4
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 4.4e-50 201.8 171 61.4
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 5.8e-50 201.4 171 63.2
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 5.8e-50 201.4 173 63.6
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 7.5e-50 201.1 173 63.0
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 9.8e-50 200.7 172 62.2
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 1.7e-49 199.9 172 62.8
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 2.2e-49 199.5 170 64.7
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 2.2e-49 199.5 174 61.5
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 2.2e-49 199.5 173 61.8
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 2.9e-49 199.1 173 61.3
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 4.9e-49 198.4 171 62.0
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 6.4e-49 198.0 174 60.3
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 6.4e-49 198.0 169 61.5
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 6.4e-49 198.0 172 61.6
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 1.1e-48 197.2 177 61.6
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 1.1e-48 197.2 173 61.8
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 2.4e-48 196.1 177 60.5
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 2.4e-48 196.1 173 61.3
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 4.1e-48 195.3 170 62.9
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 9.2e-48 194.1 173 60.7
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 2.7e-47 192.6 177 59.9
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 6.0e-47 191.4 173 58.4
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.7e-46 189.9 178 57.3
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 2.3e-46 189.5 171 60.8
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 6.6e-46 188.0 169 59.8
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 8.6e-46 187.6 172 62.2
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 3.4e-42 175.6 169 58.6
SEGI_05174 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 4.4e-42 175.3 170 58.2
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 8.3e-41 171.0 171 53.8
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 1.4e-40 170.2 172 54.7
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 7.1e-40 167.9 169 57.4
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 1.6e-39 166.8 145 57.9
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.6e-39 166.8 170 55.9
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 4.6e-39 165.2 177 52.0
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 6.6e-38 161.4 173 49.7
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 1.9e-37 159.8 174 51.7
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 5.6e-37 158.3 177 48.0
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 2.1e-36 156.4 176 51.1
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 2.8e-36 156.0 170 48.8
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 5.2e-35 151.8 178 49.4
MCO07G762 Micromonas commoda HOM05D003212 ORTHO05D003959 5.2e-35 151.8 173 48.6
BcaC02g12603 Brassica carinata HOM05D003212 ORTHO05D003959 2.6e-34 149.4 169 50.3
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 1.3e-33 147.1 168 50.0
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 3.8e-33 145.6 167 49.7
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 8.4e-33 144.4 196 43.9
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.3e-30 136.3 108 62.0
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 1.4e-27 127.1 115 57.4
Migut.O00503 Erythranthe guttata HOM05D003212 ORTHO05D003959 4.2e-24 115.5 111 55.9
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 5.4e-24 115.2 89 64.0
Pp3c13_16830 Physcomitrium patens HOM05D003212 ORTHO05D003959 4.6e-23 112.1 141 48.9
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.1e-19 100.9 75 65.3
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 2.6e-18 96.3 88 60.2
SalBow5G0323 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.8e-17 92.4 63 71.4
SalBow5G4173 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.8e-17 92.4 63 71.4
SalBow5G1158 Salvia bowleyana HOM05D003212 ORTHO05D003959 1.1e-16 90.9 63 71.4
RhsimUnG0111600 Rhododendron simsii HOM05D001576 ORTHO05D000401 5.4e-16 88.6 93 47.3
Rhsim07G0066400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.6e-15 87.0 93 46.2
vmacro13746 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 6.0e-15 85.1 124 38.7
Aqoxy3G03071 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 1.8e-14 83.6 54 75.9
SMO250G0012 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 3.9e-14 82.4 82 47.6
SalBow5G1921 Salvia bowleyana HOM05D003212 ORTHO05D003959 6.7e-14 81.6 92 51.1
SalBow5G3827 Salvia bowleyana HOM05D003212 ORTHO05D003959 6.7e-14 81.6 92 51.1
SMO259G0030 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 1.5e-13 80.5 82 46.3
FvH4_3g03840 Fragaria vesca HOM05D013275 ORTHO05D015659 3.6e-12 75.9 52 67.3
BcaC08g43728 Brassica carinata HOM05D003212 ORTHO05D003959 4.8e-12 75.5 67 59.7
vmacro22863 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 9.0e-11 71.2 97 41.2
RcHm_v2.0_Chr5g0023651 Rosa chinensis HOM05D003212 ORTHO05D015659 2.6e-10 69.7 46 73.9
CAN.G919.25 Capsicum annuum HOM05D003212 ORTHO05D003959 5.8e-10 68.6 69 59.4
RcHm_v2.0_Chr4g0435201 Rosa chinensis HOM05D003212 ORTHO05D015659 7.6e-10 68.2 46 71.7
AUR62003806 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.9e-08 63.5 42 71.4
Zm00001eb058560 Zea mays HOM05D003212 ORTHO05D003959 5.1e-06 55.5 43 60.5
Zm00001eb425780 Zea mays HOM05D003212 ORTHO05D003959 5.1e-06 55.5 43 60.5


User provided reference genes

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