Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28222_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 9.8e-29 129.4 64 100.0
ClCG07G012120 Citrullus lanatus HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
MELO3C017833.2 Cucumis melo HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
Glyma.07G025100 Glycine max HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
Glyma.08G217200 Glycine max HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
Phvul.010G160100 Phaseolus vulgaris HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
TPR.G38755 Trifolium pratense HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
VMungo0331G1149 Vigna mungo HOM05D001994 ORTHO05D001954 6.4e-12 73.6 38 97.4
Psat5g304720 Pisum sativum HOM05D001994 ORTHO05D001954 8.3e-12 73.2 38 97.4
Ca_01023_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
Gohir.A06G183100 Gossypium hirsutum HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
Gohir.D06G189800 Gossypium hirsutum HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
Gorai.010G222600 Gossypium raimondii HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
Medtr2g104910 Medicago truncatula HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
Medtr4g006570 Medicago truncatula HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
TPR.G19142 Trifolium pratense HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
GSVIVG01035904001 Vitis vinifera HOM05D001994 ORTHO05D001954 1.1e-11 72.8 38 97.4
Glyma.07G025200 Glycine max HOM05D001994 ORTHO05D001954 1.9e-11 72.0 38 94.7
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.9e-11 72.0 38 92.1
Lalb_Chr25g0278961 Lupinus albus HOM05D001994 ORTHO05D001954 2.4e-11 71.6 38 94.7
Potri.001G047100 Populus trichocarpa HOM05D001994 ORTHO05D001954 2.4e-11 71.6 38 94.7
Potri.003G180800 Populus trichocarpa HOM05D001994 ORTHO05D001954 2.4e-11 71.6 38 94.7
Sabra03G0132300 Salix brachista HOM05D001994 ORTHO05D001954 2.4e-11 71.6 38 94.7
Aa31LG7G470 Aethionema arabicum HOM05D001994 ORTHO05D001954 3.2e-11 71.2 38 94.7
arahy.Tifrunner.gnm1.ann1.83S23U Arachis hypogaea HOM05D001994 ORTHO05D001954 3.2e-11 71.2 38 94.7
arahy.Tifrunner.gnm1.ann1.U3C25F Arachis hypogaea HOM05D001994 ORTHO05D001954 3.2e-11 71.2 38 94.7
THA.LOC104812436 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 3.2e-11 71.2 38 94.7
Aqoxy7G03483 Aquilegia oxysepala HOM05D001994 ORTHO05D001954 4.1e-11 70.9 38 89.5
Duzib192G0880 Durio zibethinus HOM05D001994 ORTHO05D001954 4.1e-11 70.9 38 94.7
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 4.1e-11 70.9 40 87.5
Manes.04G104300 Manihot esculenta HOM05D001994 ORTHO05D001954 5.4e-11 70.5 38 92.1
Manes.11G064800 Manihot esculenta HOM05D001994 ORTHO05D001954 5.4e-11 70.5 38 92.1
Atru.chr10.2400 Acer truncatum HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
AL1G28040 Arabidopsis lyrata HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
AT1G15880 Arabidopsis thaliana HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
BcaB03g14513 Brassica carinata HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
BcaC07g38797 Brassica carinata HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
BcaC07g41467 Brassica carinata HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
A06p11930 Brassica napus HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
A09p61110 Brassica napus HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
C08p17330 Brassica napus HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
C08p44710 Brassica napus HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
BolC8t49359H Brassica oleracea HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
BraA06t24363Z Brassica rapa HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
BraA09t41485Z Brassica rapa HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
Carub.0001s1568 Capsella rubella HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
Ciclev10026431m.g Citrus clementina HOM05D001994 ORTHO05D001954 7.0e-11 70.1 38 92.1
Ah.01g006810 Amaranthus hybridus HOM05D001994 ORTHO05D001954 9.2e-11 69.7 47 74.5
CSS0019888 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 9.2e-11 69.7 38 92.1
Hund06149 Selenicereus undatus HOM05D001994 ORTHO05D001954 9.2e-11 69.7 38 92.1
CARHR016400 Cardamine hirsuta HOM05D001994 ORTHO05D001954 1.2e-10 69.3 38 89.5
CiPaw.01G253400 Carya illinoinensis HOM05D001994 ORTHO05D001954 1.2e-10 69.3 38 92.1
Lj8A735G56 Lonicera japonica HOM05D001994 ORTHO05D001954 1.2e-10 69.3 38 92.1
COL.COLO4_26672 Corchorus olitorius HOM05D001994 ORTHO05D001954 1.6e-10 68.9 38 89.5
Lj3g0010287 Lotus japonicus HOM05D001994 ORTHO05D001954 1.6e-10 68.9 38 89.5
QL05p035311 Quercus lobata HOM05D001994 ORTHO05D001954 1.6e-10 68.9 38 92.1
A08p31470 Brassica napus HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
BraA08t35069Z Brassica rapa HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
FvH4_6g28830 Fragaria vesca HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
FAN02G3685 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
FAN05G2047 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
FAN09G4548 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
FAN14G3785 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
RcHm_v2.0_Chr2g0133301 Rosa chinensis HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
RcHm_v2.0_Chr2g0133361 Rosa chinensis HOM05D001994 ORTHO05D001954 2.0e-10 68.6 38 89.5
BolC8t52017H Brassica oleracea HOM05D001994 ORTHO05D001954 2.7e-10 68.2 38 89.5
Cpa.g.sc10.103 Carica papaya HOM05D001994 ORTHO05D001954 2.7e-10 68.2 38 89.5
Lj7A730G44 Lonicera japonica HOM05D001994 ORTHO05D001954 2.7e-10 68.2 38 89.5
Hund00449 Selenicereus undatus HOM05D001994 ORTHO05D001954 2.7e-10 68.2 38 89.5
TAR625G0574 Trochodendron aralioides HOM05D001994 ORTHO05D001954 2.7e-10 68.2 38 89.5
C05p14110 Brassica napus HOM05D001994 ORTHO05D001954 3.5e-10 67.8 38 89.5
BolC5t30142H Brassica oleracea HOM05D001994 ORTHO05D001954 3.5e-10 67.8 38 89.5
Lsat_1_v5_gn_1_42920 Lactuca sativa HOM05D001994 ORTHO05D001954 3.5e-10 67.8 38 86.8
EL10Ac9g22223 Beta vulgaris HOM05D001994 ORTHO05D001954 4.6e-10 67.4 38 86.8
CANSAT56G4375 Cannabis sativa HOM05D001994 ORTHO05D001954 4.6e-10 67.4 38 86.8
AUR62030826 Chenopodium quinoa HOM05D000333 ORTHO05D001954 4.6e-10 67.4 38 86.8
Lsat_1_v5_gn_6_19560 Lactuca sativa HOM05D001994 ORTHO05D001954 4.6e-10 67.4 38 89.5
Thecc.06G039400 Theobroma cacao HOM05D001994 ORTHO05D001954 4.6e-10 67.4 38 89.5
arahy.Tifrunner.gnm1.ann1.4TE40S Arachis hypogaea HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
arahy.Tifrunner.gnm1.ann1.K18KXM Arachis hypogaea HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
BcaB03g13053 Brassica carinata HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
AUR62026987 Chenopodium quinoa HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
ECA248G1195 Erigeron canadensis HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
Migut.A00005 Erythranthe guttata HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 89.5
Thhalv10008707m.g Eutrema salsugineum HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
Lalb_Chr14g0374041 Lupinus albus HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 89.5
MD12G1002100 Malus domestica HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
Sc12g0008500 Simmondsia chinensis HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 86.8
SGA_v2.0_scaffold20G09080 Striga asiatica HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 89.5
SGA_v2.0_scaffold64G22012 Striga asiatica HOM05D001994 ORTHO05D001954 6.0e-10 67.0 38 89.5
COL.COLO4_35861 Corchorus olitorius HOM05D001994 ORTHO05D001954 7.8e-10 66.6 41 80.5
Rhsim07G0162900 Rhododendron simsii HOM05D001994 ORTHO05D001954 7.8e-10 66.6 38 86.8
Actinidia14114 Actinidia chinensis HOM05D001994 ORTHO05D001954 1.0e-09 66.2 38 86.8
HanXRQChr02g0050041 Helianthus annuus HOM05D001994 ORTHO05D001954 1.0e-09 66.2 38 86.8
Sp1g14180 Schrenkiella parvula HOM05D001994 ORTHO05D001954 1.0e-09 66.2 38 84.2
TWI75G0158 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 1.0e-09 66.2 40 82.5
MD14G1001700 Malus domestica HOM05D001994 ORTHO05D001954 1.3e-09 65.9 38 84.2
Peaxi162Scf00430g00414 Petunia axillaris HOM05D001994 ORTHO05D001954 1.7e-09 65.5 38 86.8
Prupe.3G096500 Prunus persica HOM05D001994 ORTHO05D001954 1.7e-09 65.5 38 84.2
TWI12G0732 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 1.7e-09 65.5 38 86.8
Zm00001eb312810 Zea mays HOM05D001994 ORTHO05D001954 1.7e-09 65.5 38 84.2
CiPaw.02G161300 Carya illinoinensis HOM05D001994 ORTHO05D001954 2.3e-09 65.1 38 86.8
TAR636G1457 Trochodendron aralioides HOM05D001994 ORTHO05D001954 2.3e-09 65.1 38 86.8
vmacro05144 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 2.3e-09 65.1 38 81.6
Haze_16654 Corylus avellana HOM05D001994 ORTHO05D001954 3.0e-09 64.7 38 86.8
Hma1.2p1_0230F.1_g097260 Hydrangea macrophylla HOM05D001994 ORTHO05D001954 3.0e-09 64.7 38 86.8
Cc08_g00070 Coffea canephora HOM05D001994 ORTHO05D001954 3.9e-09 64.3 38 84.2
Nitab4.5_0002503g0100 Nicotiana tabacum HOM05D001994 ORTHO05D001954 3.9e-09 64.3 38 84.2
Nitab4.5_0003811g0030 Nicotiana tabacum HOM05D001994 ORTHO05D001954 3.9e-09 64.3 38 84.2
Oeu056769.1 Olea europaea HOM05D001994 ORTHO05D001954 3.9e-09 64.3 38 84.2
PGR031G3441 Punica granatum HOM05D001994 ORTHO05D001954 3.9e-09 64.3 37 86.5
PGSC0003DMG400026095 Solanum tuberosum HOM05D001994 ORTHO05D001954 3.9e-09 64.3 38 84.2
Dinv09914 Davidia involucrata HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 84.2
ECA233G1283 Erigeron canadensis HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 84.2
HanXRQChr01g0030681 Helianthus annuus HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 81.6
Nitab4.5_0000486g0060 Nicotiana tabacum HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 84.2
Peaxi162Scf00992g00314 Petunia axillaris HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 84.2
Rhsim02G0208000 Rhododendron simsii HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 81.6
Solyc06g065740.4 Solanum lycopersicum HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 81.6
Sopen06g024270 Solanum pennellii HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 81.6
Zm00001eb099480 Zea mays HOM05D001994 ORTHO05D001954 5.0e-09 63.9 38 81.6
Os08g0440000 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 6.6e-09 63.5 38 81.6
PSO339G5511 Papaver somniferum HOM05D001994 ORTHO05D001954 6.6e-09 63.5 38 81.6
Actinidia13202 Actinidia chinensis HOM05D001994 ORTHO05D001954 8.6e-09 63.2 38 78.9
Os09g0416700 Oryza sativa ssp. japonica HOM05D001994 ORTHO05D001954 8.6e-09 63.2 38 81.6
vmacro11231 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 8.6e-09 63.2 38 81.6
Sed0001620 Sechium edule HOM05D001994 ORTHO05D001954 1.1e-08 62.8 38 78.9
CSS0020502 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 1.5e-08 62.4 38 84.2
CAN.G199.66 Capsicum annuum HOM05D001994 ORTHO05D001954 1.9e-08 62.0 38 81.6
Lsat_1_v5_gn_5_39901 Lactuca sativa HOM05D001994 ORTHO05D001954 2.5e-08 61.6 38 78.9
MSTRG.11593 Avicennia marina HOM05D001994 ORTHO05D001954 4.3e-08 60.8 37 78.4
Nitab4.5_0002973g0040 Nicotiana tabacum HOM05D001994 ORTHO05D001954 4.3e-08 60.8 38 78.9
Nn2g12287 Nelumbo nucifera HOM05D001994 ORTHO05D001954 5.6e-08 60.5 38 78.9
CDE02G4158 Ceratophyllum demersum HOM05D001994 ORTHO05D001954 7.3e-08 60.1 38 81.6
Nn8g39769 Nelumbo nucifera HOM05D001994 ORTHO05D001954 9.5e-08 59.7 38 76.3
unitig_748.g8263 Utricularia gibba HOM05D001994 ORTHO05D001954 9.5e-08 59.7 37 75.7
ATR0184G001 Amborella trichopoda HOM05D001994 ORTHO05D001954 1.6e-07 58.9 38 76.3
SHI08646 Sapria himalayana HOM05D001994 ORTHO05D001954 2.1e-07 58.5 37 78.4


User provided reference genes

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