Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28209_v3 Cicer arietinum L. HOM05D005967 ORTHO05D005174 1.4e-66 256.1 128 100.0
Psat7g217000 Pisum sativum HOM05D005967 ORTHO05D005174 1.7e-27 126.3 122 61.5
Psat0s8791g0040 Pisum sativum HOM05D005967 ORTHO05D005174 6.3e-27 124.4 122 57.4
Medtr4g063885 Medicago truncatula HOM05D005967 ORTHO05D005174 1.8e-26 122.9 121 58.7
TPR.G14476 Trifolium pratense HOM05D005967 ORTHO05D005174 8.8e-21 104.0 134 55.2
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 1.2e-12 77.0 92 50.0
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.0e-12 76.3 91 53.8
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 2.0e-12 76.3 93 53.8
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 4.4e-12 75.1 82 58.5
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.4e-12 75.1 91 52.7
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 7.5e-12 74.3 124 47.6
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 9.8e-12 73.9 95 55.8
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.7e-11 73.2 91 51.6
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 2.2e-11 72.8 93 51.6
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 2.8e-11 72.4 95 48.4
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 2.8e-11 72.4 97 53.6
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 4.8e-11 71.6 94 54.3
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 1.4e-10 70.1 95 52.6
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.4e-10 69.3 92 47.8
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 3.1e-10 68.9 128 45.3
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.1e-10 68.6 92 46.7
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 5.4e-10 68.2 71 54.9
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 5.4e-10 68.2 78 53.8
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 7.0e-10 67.8 90 50.0
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 9.1e-10 67.4 81 55.6
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 9.1e-10 67.4 78 52.6
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 1.2e-09 67.0 119 47.1
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 2.7e-09 65.9 110 42.7
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 3.5e-09 65.5 77 55.8
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 3.5e-09 65.5 78 52.6
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 3.5e-09 65.5 78 52.6
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 3.5e-09 65.5 92 50.0
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 5.9e-09 64.7 124 43.5
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 5.9e-09 64.7 124 43.5
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 1.0e-08 63.9 124 42.7
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 1.0e-08 63.9 133 41.4
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 1.0e-08 63.9 99 43.4
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 1.0e-08 63.9 134 39.6
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 1.3e-08 63.5 74 59.5
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.3e-08 63.5 124 42.7
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.7e-08 63.2 76 52.6
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.2e-08 62.8 81 48.1
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.9e-08 62.4 80 50.0
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 2.9e-08 62.4 110 47.3
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 3.8e-08 62.0 86 47.7
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 6.5e-08 61.2 124 41.9
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 6.5e-08 61.2 134 39.6
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 8.5e-08 60.8 94 45.7
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 1.5e-07 60.1 89 49.4
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 1.5e-07 60.1 89 49.4
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 1.5e-07 60.1 89 49.4
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.9e-07 59.7 96 44.8
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 2.5e-07 59.3 98 44.9
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.2e-07 58.9 89 46.1
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.2e-07 58.9 83 47.0
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 9.4e-07 57.4 83 45.8
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 9.4e-07 57.4 90 45.6
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 1.6e-06 56.6 104 40.4
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.1e-06 56.2 79 45.6
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 2.7e-06 55.8 98 42.9
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 3.6e-06 55.5 80 45.0
Lalb_Chr03g0026661 Lupinus albus HOM05D005967 ORTHO05D005174 4.7e-06 55.1 92 42.4
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 4.7e-06 55.1 71 49.3
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 6.1e-06 54.7 80 41.2
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 6.1e-06 54.7 85 37.6
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 8.0e-06 54.3 77 45.5


User provided reference genes

Program Settings