Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28062_v3 Cicer arietinum L. HOM05D000411 ORTHO05D028853 6.4e-55 217.2 114 100.0
Psat1g132120 Pisum sativum HOM05D000411 ORTHO05D000310 1.5e-27 126.3 114 66.7
Glyma.17G053500 Glycine max HOM05D000411 ORTHO05D000310 3.2e-22 108.6 94 63.8
Glyma.13G105900 Glycine max HOM05D000411 ORTHO05D000310 5.4e-22 107.8 94 63.8
VMungo1215G2392 Vigna mungo HOM05D000411 ORTHO05D000310 2.3e-20 102.4 94 59.6
Lj4g0017138 Lotus japonicus HOM05D000411 ORTHO05D000310 2.5e-19 99.0 94 58.5
arahy.Tifrunner.gnm1.ann1.UDXZ3L Arachis hypogaea HOM05D000411 ORTHO05D000310 5.6e-19 97.8 94 56.4
Eucgr.C03421 Eucalyptus grandis HOM05D000411 ORTHO05D000310 7.3e-19 97.4 111 54.1
Lalb_Chr23g0276481 Lupinus albus HOM05D000411 ORTHO05D000310 1.6e-18 96.3 111 53.2
Medtr2g039930 Medicago truncatula HOM05D000411 ORTHO05D000310 2.1e-18 95.9 113 58.4
QL02p062153 Quercus lobata HOM05D000411 ORTHO05D000310 6.2e-18 94.4 109 52.3
Ca_21288_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 8.1e-18 94.0 94 57.4
Phvul.003G135100 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 1.8e-17 92.8 95 56.8
Psat7g044120 Pisum sativum HOM05D000411 ORTHO05D000310 2.4e-17 92.4 94 54.3
Sed0013014 Sechium edule HOM05D000411 ORTHO05D000310 4.0e-17 91.7 112 46.4
MBI01_g21124_MAGBIO Magnolia biondii HOM05D000411 ORTHO05D000310 5.3e-17 91.3 111 51.4
MBI04_g36905_MAGBIO Magnolia biondii HOM05D000411 ORTHO05D000310 9.0e-17 90.5 111 50.5
MELO3C004631.2 Cucumis melo HOM05D000411 ORTHO05D000310 1.2e-16 90.1 112 45.5
Medtr4g126010 Medicago truncatula HOM05D000411 ORTHO05D000310 2.0e-16 89.4 95 55.8
GSVIVG01015176001 Vitis vinifera HOM05D000411 ORTHO05D000310 2.0e-16 89.4 113 54.9
Psat0s4845g0040 Pisum sativum HOM05D000411 ORTHO05D000310 2.6e-16 89.0 94 54.3
Lalb_Chr11g0074541 Lupinus albus HOM05D000411 ORTHO05D000310 9.9e-16 87.0 103 54.4
TPR.G21877 Trifolium pratense HOM05D000411 ORTHO05D000310 1.3e-15 86.7 94 59.6
TAR383G0633 Trochodendron aralioides HOM05D000411 ORTHO05D000310 1.3e-15 86.7 112 50.9
arahy.Tifrunner.gnm1.ann1.HE33X4 Arachis hypogaea HOM05D000411 ORTHO05D000310 1.7e-15 86.3 111 52.3
arahy.Tifrunner.gnm1.ann1.HQ34D4 Arachis hypogaea HOM05D000411 ORTHO05D000310 1.7e-15 86.3 111 52.3
ClCG11G001690 Citrullus lanatus HOM05D000411 ORTHO05D000310 2.2e-15 85.9 114 44.7
TPR.G9455 Trifolium pratense HOM05D000411 ORTHO05D000310 2.9e-15 85.5 94 52.1
Ciclev10008160m.g Citrus clementina HOM05D000411 ORTHO05D000310 4.9e-15 84.7 113 50.4
Lalb_Chr12g0199871 Lupinus albus HOM05D000411 ORTHO05D000310 6.4e-15 84.3 93 57.0
Atru.chr7.1624 Acer truncatum HOM05D000411 ORTHO05D000310 8.4e-15 84.0 101 54.5
Duzib187G1848 Durio zibethinus HOM05D000411 ORTHO05D000310 8.4e-15 84.0 112 47.3
CsaV3_2G001390 Cucumis sativus L. HOM05D000411 ORTHO05D000310 1.4e-14 83.2 113 43.4
Duzib150G0571 Durio zibethinus HOM05D000411 ORTHO05D000310 1.4e-14 83.2 112 47.3
Manes.03G035700 Manihot esculenta HOM05D000411 ORTHO05D000310 1.4e-14 83.2 111 45.0
Glyma.09G065200 Glycine max HOM05D000411 ORTHO05D000310 1.9e-14 82.8 111 53.2
Prupe.7G206400 Prunus persica HOM05D000411 ORTHO05D000310 1.9e-14 82.8 111 47.7
CiPaw.04G148000 Carya illinoinensis HOM05D000411 ORTHO05D000310 4.2e-14 81.6 107 50.5
CANSAT56G0929 Cannabis sativa HOM05D000411 ORTHO05D000310 5.4e-14 81.3 112 45.5
Potri.006G147800 Populus trichocarpa HOM05D000411 ORTHO05D000310 5.4e-14 81.3 109 47.7
Sabra18G0058400 Salix brachista HOM05D000411 ORTHO05D000310 7.1e-14 80.9 136 42.6
Sabra06G0116900 Salix brachista HOM05D000411 ORTHO05D000310 9.3e-14 80.5 107 47.7
RcHm_v2.0_Chr2g0093731 Rosa chinensis HOM05D000411 ORTHO05D000310 2.7e-13 79.0 111 41.4
Thecc.09G085600 Theobroma cacao HOM05D000411 ORTHO05D000310 2.7e-13 79.0 112 45.5
TWI32G1024 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 3.5e-13 78.6 113 47.8
Lalb_Chr13g0299611 Lupinus albus HOM05D000411 ORTHO05D000310 4.6e-13 78.2 94 55.3
PSO063G1053 Papaver somniferum HOM05D000411 ORTHO05D000310 4.6e-13 78.2 111 44.1
PSO832G2411 Papaver somniferum HOM05D000411 ORTHO05D000310 6.0e-13 77.8 111 43.2
Zm00001eb155250 Zea mays HOM05D000411 ORTHO05D000310 6.0e-13 77.8 109 47.7
Dinv42337 Davidia involucrata HOM05D000411 ORTHO05D000310 7.9e-13 77.4 106 48.1
Duzib168G1569 Durio zibethinus HOM05D000411 ORTHO05D000310 1.0e-12 77.0 112 43.8
FvH4_1g07860 Fragaria vesca HOM05D000411 ORTHO05D000310 1.0e-12 77.0 111 39.6
FAN19G2342 Fragaria x ananassa HOM05D000411 ORTHO05D000310 1.0e-12 77.0 111 39.6
FAN26G0943 Fragaria x ananassa HOM05D000411 ORTHO05D000310 1.0e-12 77.0 111 39.6
FAN23G1735 Fragaria x ananassa HOM05D000411 ORTHO05D000310 1.3e-12 76.6 111 39.6
TWI63G0056 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 1.8e-12 76.3 113 46.0
Aqoxy7G01168 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 2.3e-12 75.9 112 45.5
FAN26G1301 Fragaria x ananassa HOM05D000411 ORTHO05D000310 2.3e-12 75.9 111 38.7
Thecc.08G142400 Theobroma cacao HOM05D000411 ORTHO05D028853 3.0e-12 75.5 112 44.6
Zm00001eb361220 Zea mays HOM05D000411 ORTHO05D000310 3.9e-12 75.1 109 45.9
Phvul.009G230800 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 5.1e-12 74.7 110 49.1
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 6.7e-12 74.3 112 44.6
TWI34G0498 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 6.7e-12 74.3 111 45.9
VMungo1309G2991 Vigna mungo HOM05D000411 ORTHO05D000310 6.7e-12 74.3 110 47.3
CiPaw.03G212700 Carya illinoinensis HOM05D000411 ORTHO05D000310 1.1e-11 73.6 107 47.7
Gohir.D13G198200 Gossypium hirsutum HOM05D000411 ORTHO05D000310 1.1e-11 73.6 111 44.1
Gorai.013G227100 Gossypium raimondii HOM05D000411 ORTHO05D000310 1.1e-11 73.6 111 44.1
Hma1.2p1_0672F.1_g201030 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 1.1e-11 73.6 110 45.5
MD02G1082400 Malus domestica HOM05D000411 ORTHO05D000310 1.1e-11 73.6 111 43.2
Gohir.A07G012800 Gossypium hirsutum HOM05D000411 ORTHO05D000310 1.5e-11 73.2 110 44.5
Lj7A679G75 Lonicera japonica HOM05D000411 ORTHO05D000310 1.5e-11 73.2 112 44.6
Manes.16G100200 Manihot esculenta HOM05D000411 ORTHO05D000310 1.9e-11 72.8 115 44.3
Potri.018G065900 Populus trichocarpa HOM05D000411 ORTHO05D000310 1.9e-11 72.8 113 45.1
DCAR_028270 Daucus carota HOM05D000411 ORTHO05D000310 2.5e-11 72.4 107 43.9
SGA_v2.0_scaffold21G09404 Striga asiatica HOM05D000411 ORTHO05D000310 2.5e-11 72.4 112 44.6
Gohir.A13G192900 Gossypium hirsutum HOM05D000411 ORTHO05D000310 4.3e-11 71.6 111 44.1
Hma1.2p1_1128F.1_g259720 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 9.6e-11 70.5 114 40.4
Oeu033948.1 Olea europaea HOM05D000411 ORTHO05D000310 9.6e-11 70.5 112 43.8
Glyma.15G171100 Glycine max HOM05D000411 ORTHO05D000310 1.3e-10 70.1 135 40.7
Gohir.D07G012600 Gossypium hirsutum HOM05D000411 ORTHO05D000310 1.3e-10 70.1 108 45.4
MD15G1210300 Malus domestica HOM05D000411 ORTHO05D000310 2.1e-10 69.3 108 44.4
Solyc07g040720.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 2.1e-10 69.3 116 44.0
Sopen07g019460 Solanum pennellii HOM05D000411 ORTHO05D000310 2.1e-10 69.3 116 44.0
Nitab4.5_0000024g0050 Nicotiana tabacum HOM05D000411 ORTHO05D000310 2.8e-10 68.9 112 45.5
AUR62029036 Chenopodium quinoa HOM05D000411 ORTHO05D000310 3.6e-10 68.6 115 43.5
Peaxi162Scf00724g00117 Petunia axillaris HOM05D000411 ORTHO05D000310 3.6e-10 68.6 113 46.0
COL.COLO4_18178 Corchorus olitorius HOM05D000411 ORTHO05D000310 4.8e-10 68.2 111 39.6
FAN15G3733 Fragaria x ananassa HOM05D000411 ORTHO05D000310 6.2e-10 67.8 107 37.4
Nitab4.5_0002945g0030 Nicotiana tabacum HOM05D000411 ORTHO05D000310 8.1e-10 67.4 112 44.6
Actinidia38456 Actinidia chinensis HOM05D000411 ORTHO05D000310 1.1e-09 67.0 107 43.0
Cpa.g.sc28.150 Carica papaya HOM05D000411 ORTHO05D000310 1.4e-09 66.6 111 45.0
Hma1.2p1_0496F.1_g165950 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 1.4e-09 66.6 113 45.1
PGSC0003DMG400032791 Solanum tuberosum HOM05D000411 ORTHO05D000310 1.4e-09 66.6 116 43.1
Cc06_g11600 Coffea canephora HOM05D000411 ORTHO05D000310 1.8e-09 66.2 107 44.9
CSS0035061 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 2.4e-09 65.9 107 45.8
Gohir.A05G136200 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.4e-09 65.9 113 44.2
Os05g0593800 Oryza sativa ssp. japonica HOM05D000411 ORTHO05D000310 3.1e-09 65.5 111 39.6
CSS0044784 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 4.0e-09 65.1 106 42.5
Hund06664 Selenicereus undatus HOM05D000411 ORTHO05D000310 4.0e-09 65.1 115 42.6
Ciclev10025527m.g Citrus clementina HOM05D000411 ORTHO05D000310 5.3e-09 64.7 112 42.9
RcHm_v2.0_Chr2g0144221 Rosa chinensis HOM05D000411 ORTHO05D000310 5.3e-09 64.7 111 44.1
Zm00001eb297290 Zea mays HOM05D000411 ORTHO05D000310 6.9e-09 64.3 112 39.3
CAN.G57.14 Capsicum annuum HOM05D000411 ORTHO05D000310 9.0e-09 63.9 98 46.9
HPP92_005504 Vanilla planifolia HOM05D000411 ORTHO05D000310 1.2e-08 63.5 121 38.8
CDE02G0442 Ceratophyllum demersum HOM05D000411 ORTHO05D000310 1.5e-08 63.2 110 41.8
Glyma.15G025900 Glycine max HOM05D000411 ORTHO05D000310 1.5e-08 63.2 108 44.4
MD17G1173000 Malus domestica HOM05D000411 ORTHO05D000310 2.0e-08 62.8 112 43.8
vmacro17036 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 2.0e-08 62.8 109 44.0
ATR0789G032 Amborella trichopoda HOM05D000411 ORTHO05D000310 2.6e-08 62.4 113 40.7
RcHm_v2.0_Chr2g0143751 Rosa chinensis HOM05D000411 ORTHO05D028853 2.6e-08 62.4 112 43.8
RcHm_v2.0_Chr2g0143961 Rosa chinensis HOM05D000411 ORTHO05D000310 2.6e-08 62.4 112 42.9
MSTRG.10547 Avicennia marina HOM05D000411 ORTHO05D000310 4.5e-08 61.6 110 41.8
Cfa003059 Carpinus fangiana HOM05D000411 ORTHO05D000310 4.5e-08 61.6 107 42.1
Duzib235G1288 Durio zibethinus HOM05D000411 ORTHO05D000310 4.5e-08 61.6 111 38.7
MD09G1190100 Malus domestica HOM05D000411 ORTHO05D000310 4.5e-08 61.6 112 44.6
Peaxi162Scf00563g00009 Petunia axillaris HOM05D000411 ORTHO05D000310 4.5e-08 61.6 105 41.9
Rhsim12G0207900 Rhododendron simsii HOM05D000411 ORTHO05D000310 4.5e-08 61.6 110 45.5
SalBow1G0280 Salvia bowleyana HOM05D000411 ORTHO05D000310 4.5e-08 61.6 112 40.2
AUR62033937 Chenopodium quinoa HOM05D000411 ORTHO05D000310 5.8e-08 61.2 104 44.2
Dinv37894 Davidia involucrata HOM05D000411 ORTHO05D000310 7.6e-08 60.8 114 41.2
PGR102G2797 Punica granatum HOM05D000411 ORTHO05D000310 7.6e-08 60.8 110 42.7
Gohir.D05G138200 Gossypium hirsutum HOM05D000411 ORTHO05D000310 9.9e-08 60.5 113 42.5
Rhsim03G0231400 Rhododendron simsii HOM05D000411 ORTHO05D000310 9.9e-08 60.5 112 42.9
CAN.G148.9 Capsicum annuum HOM05D000411 ORTHO05D000310 1.3e-07 60.1 113 43.4
FAN09G3267 Fragaria x ananassa HOM05D000411 ORTHO05D000310 1.3e-07 60.1 112 42.9
vmacro06301 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 1.3e-07 60.1 112 43.8
Haze_25936 Corylus avellana HOM05D000411 ORTHO05D000310 1.7e-07 59.7 107 41.1
GSVIVG01016807001 Vitis vinifera HOM05D000411 ORTHO05D000310 1.7e-07 59.7 111 36.0
CANSAT56G0043 Cannabis sativa HOM05D000411 ORTHO05D000310 2.9e-07 58.9 112 41.1
Sc14g0000660 Simmondsia chinensis HOM05D000411 ORTHO05D000310 2.9e-07 58.9 114 38.6
FAN02G3753 Fragaria x ananassa HOM05D000411 ORTHO05D000310 3.8e-07 58.5 112 42.0
Medtr2g099670 Medicago truncatula HOM05D000411 ORTHO05D000310 3.8e-07 58.5 109 39.4
PSO210G0658 Papaver somniferum HOM05D000411 ORTHO05D000310 3.8e-07 58.5 113 39.8
Actinidia39098 Actinidia chinensis HOM05D000411 ORTHO05D000310 4.9e-07 58.2 112 42.0
Gorai.009G142600 Gossypium raimondii HOM05D000411 ORTHO05D000310 6.4e-07 57.8 113 40.7
Prupe.3G046000 Prunus persica HOM05D000411 ORTHO05D000310 6.4e-07 57.8 112 42.9
Thecc.06G114800 Theobroma cacao HOM05D000411 ORTHO05D000310 6.4e-07 57.8 112 39.3
TPR.G6515 Trifolium pratense HOM05D000411 ORTHO05D000310 6.4e-07 57.8 109 39.4
HanXRQChr10g0312381 Helianthus annuus HOM05D000411 ORTHO05D000310 8.4e-07 57.4 108 38.9
PSO210G7352 Papaver somniferum HOM05D000411 ORTHO05D000310 8.4e-07 57.4 113 39.8
Migut.D00956 Erythranthe guttata HOM05D000411 ORTHO05D000310 1.1e-06 57.0 113 39.8
FAN05G0588 Fragaria x ananassa HOM05D000411 ORTHO05D000310 1.1e-06 57.0 112 41.1
Glyma.13G348100 Glycine max HOM05D000411 ORTHO05D000310 1.4e-06 56.6 108 41.7
Lalb_Chr24g0396511 Lupinus albus HOM05D000411 ORTHO05D000310 1.4e-06 56.6 108 42.6
FvH4_2g37860 Fragaria vesca HOM05D000411 ORTHO05D028853 1.9e-06 56.2 87 41.4
CiPaw.01G222100 Carya illinoinensis HOM05D000411 ORTHO05D000310 2.4e-06 55.8 112 40.2
FAN14G3689 Fragaria x ananassa HOM05D000411 ORTHO05D000310 2.4e-06 55.8 112 40.2
MSTRG.26439 Avicennia marina HOM05D000411 ORTHO05D000310 3.2e-06 55.5 112 37.5
Eucgr.J02844 Eucalyptus grandis HOM05D000411 ORTHO05D000310 3.2e-06 55.5 112 41.1
Cfa003554 Carpinus fangiana HOM05D000411 ORTHO05D000310 4.2e-06 55.1 112 39.3
Cpa.g.sc25.78 Carica papaya HOM05D000411 ORTHO05D000310 5.5e-06 54.7 89 47.2
Duzib160G0595 Durio zibethinus HOM05D000411 ORTHO05D000310 5.5e-06 54.7 112 38.4
Manes.11G023900 Manihot esculenta HOM05D000411 ORTHO05D000310 5.5e-06 54.7 107 43.9
CSS0049748 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.1e-06 54.3 112 42.0
COL.COLO4_30687 Corchorus olitorius HOM05D000411 ORTHO05D000310 7.1e-06 54.3 112 38.4
Nitab4.5_0005003g0160 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.1e-06 54.3 96 43.8
RcHm_v2.0_Chr2g0143831 Rosa chinensis HOM05D000411 ORTHO05D000310 7.1e-06 54.3 95 46.3
RcHm_v2.0_Chr2g0144271 Rosa chinensis HOM05D000411 ORTHO05D000310 7.1e-06 54.3 95 46.3
EL10Ac8g19180 Beta vulgaris HOM05D000411 ORTHO05D000310 9.3e-06 53.9 98 39.8
Psat5g290280 Pisum sativum HOM05D000411 ORTHO05D000310 9.3e-06 53.9 109 36.7
Rhsim08G0235500 Rhododendron simsii HOM05D000411 ORTHO05D000310 9.3e-06 53.9 112 39.3


User provided reference genes

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