Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 2.9e-23 110.9 51 100.0
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 4.3e-11 70.5 37 89.2
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 9.6e-11 69.3 37 89.2
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 9.6e-11 69.3 37 86.5
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.8e-10 67.8 35 91.4
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 3.6e-10 67.4 37 86.5
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 6.2e-10 66.6 37 83.8
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 1.1e-09 65.9 37 83.8
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 3.1e-09 64.3 38 73.7
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 3.1e-09 64.3 37 78.4
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 4.0e-09 63.9 37 75.7
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 4.0e-09 63.9 37 75.7
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 4.0e-09 63.9 37 75.7
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 6.9e-09 63.2 50 62.0
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 9.0e-09 62.8 37 75.7
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 9.0e-09 62.8 37 78.4
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 1.5e-08 62.0 37 75.7
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 1.5e-08 62.0 37 75.7
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.5e-08 62.0 37 75.7
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 1.5e-08 62.0 37 75.7
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 1.5e-08 62.0 37 73.0
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 2.0e-08 61.6 37 73.0
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 2.6e-08 61.2 37 70.3
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 2.6e-08 61.2 37 75.7
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 2.6e-08 61.2 37 75.7
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 3.4e-08 60.8 37 75.7
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 3.4e-08 60.8 44 61.4
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 4.4e-08 60.5 37 70.3
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 4.4e-08 60.5 37 70.3
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 4.4e-08 60.5 37 73.0
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 4.4e-08 60.5 37 73.0
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 4.4e-08 60.5 37 73.0
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 4.4e-08 60.5 37 73.0
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 5.8e-08 60.1 37 73.0
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 5.8e-08 60.1 37 70.3
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 5.8e-08 60.1 37 70.3
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 5.8e-08 60.1 37 73.0
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 5.8e-08 60.1 37 70.3
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 7.6e-08 59.7 37 70.3
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 7.6e-08 59.7 37 73.0
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 9.9e-08 59.3 37 70.3
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 9.9e-08 59.3 36 75.0
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 1.3e-07 58.9 38 65.8
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 1.3e-07 58.9 37 73.0
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 1.3e-07 58.9 38 73.7
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 1.7e-07 58.5 38 71.1
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 1.7e-07 58.5 37 70.3
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 1.7e-07 58.5 37 70.3
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 1.7e-07 58.5 37 70.3
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 2.2e-07 58.2 37 73.0
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 2.9e-07 57.8 37 67.6
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 2.9e-07 57.8 37 70.3
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 67.6
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 67.6
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 67.6
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 70.3
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 70.3
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 70.3
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 64.9
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 3.8e-07 57.4 37 70.3
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 67.6
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 67.6
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 67.6
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 67.6
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 67.6
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 64.9
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 67.6
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 4.9e-07 57.0 37 70.3
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 64.9
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 67.6
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 64.9
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 6.4e-07 56.6 38 63.2
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 64.9
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 6.4e-07 56.6 38 63.2
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 64.9
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 64.9
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 70.3
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 67.6
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 6.4e-07 56.6 37 67.6
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 8.4e-07 56.2 37 67.6
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 8.4e-07 56.2 37 67.6
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 8.4e-07 56.2 37 67.6
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 1.1e-06 55.8 37 67.6
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 1.1e-06 55.8 37 64.9
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 1.1e-06 55.8 37 67.6
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 1.1e-06 55.8 37 64.9
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 1.4e-06 55.5 37 64.9
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.4e-06 55.5 37 64.9
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 1.9e-06 55.1 37 62.2
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 1.9e-06 55.1 37 62.2
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 1.9e-06 55.1 48 54.2
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 1.9e-06 55.1 48 54.2
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 2.4e-06 54.7 37 67.6
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 3.2e-06 54.3 37 64.9
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 7.1e-06 53.1 37 64.9
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 7.1e-06 53.1 37 64.9
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 7.1e-06 53.1 37 67.6
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 9.3e-06 52.8 37 62.2


User provided reference genes

Program Settings