Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 5.9e-31 137.1 81 100.0
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 8.9e-27 123.2 82 87.8
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 8.9e-27 123.2 82 87.8
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 4.4e-26 120.9 81 88.9
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 1.1e-24 116.3 82 89.0
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 2.7e-23 111.7 81 84.0
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 1.7e-22 109.0 82 84.1
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 1.7e-22 109.0 81 85.2
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 1.5e-21 105.9 81 82.7
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 1.5e-21 105.9 81 79.0
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 1.9e-21 105.5 82 73.2
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 2.5e-21 105.1 81 82.7
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 2.5e-21 105.1 81 81.5
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 4.3e-21 104.4 82 80.5
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 4.3e-21 104.4 82 80.5
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 4.3e-21 104.4 82 80.5
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 4.3e-21 104.4 82 80.5
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 4.3e-21 104.4 82 81.7
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 5.6e-21 104.0 81 81.5
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 2.1e-20 102.1 81 74.1
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 8.0e-20 100.1 82 72.0
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 3.1e-19 98.2 82 73.2
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 8.9e-19 96.7 81 63.0
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 2.0e-18 95.5 82 78.0
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 3.4e-18 94.7 82 67.1
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 5.8e-18 94.0 82 79.3
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 5.8e-18 94.0 82 62.2
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 5.8e-18 94.0 82 62.2
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 5.8e-18 94.0 82 62.2
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 7.5e-18 93.6 82 74.4
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 9.8e-18 93.2 82 63.4
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 9.8e-18 93.2 82 63.4
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 9.8e-18 93.2 82 75.6
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 9.8e-18 93.2 82 68.3
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 9.8e-18 93.2 82 65.9
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 1.3e-17 92.8 81 63.0
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 1.7e-17 92.4 81 64.2
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 1.7e-17 92.4 82 62.2
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 1.7e-17 92.4 83 61.4
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 2.2e-17 92.0 82 78.0
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 2.2e-17 92.0 82 72.0
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 2.2e-17 92.0 82 68.3
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 2.2e-17 92.0 80 65.0
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 2.2e-17 92.0 80 65.0
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 3.7e-17 91.3 82 62.2
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 3.7e-17 91.3 82 62.2
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 3.7e-17 91.3 82 73.2
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 8.3e-17 90.1 82 61.0
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 8.3e-17 90.1 82 62.2
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 1.1e-16 89.7 82 63.4
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 1.1e-16 89.7 82 63.4
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 1.9e-16 89.0 82 76.8
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 2.4e-16 88.6 77 72.7
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 2.4e-16 88.6 82 69.5
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 3.2e-16 88.2 80 63.8
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 4.1e-16 87.8 86 57.0
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 9.2e-16 86.7 85 56.5
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 9.2e-16 86.7 77 66.2
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 3.5e-15 84.7 82 63.4
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 3.5e-15 84.7 82 58.5
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 4.6e-15 84.3 82 67.1
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 6.0e-15 84.0 82 62.2
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 6.0e-15 84.0 82 62.2
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 6.0e-15 84.0 82 62.2
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 7.8e-15 83.6 82 61.0
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 7.8e-15 83.6 82 61.0
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 7.8e-15 83.6 87 55.2
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 1.3e-14 82.8 81 65.4
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.3e-14 82.0 81 60.5
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 2.3e-14 82.0 81 61.7
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 3.0e-14 81.6 82 61.0
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 3.0e-14 81.6 82 59.8
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 3.0e-14 81.6 86 53.5
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 3.9e-14 81.3 81 65.4
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 6.6e-14 80.5 81 56.8
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 6.6e-14 80.5 82 56.1
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 8.6e-14 80.1 81 58.0
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 1.1e-13 79.7 81 60.5
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 1.1e-13 79.7 81 56.8
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.5e-13 79.3 81 54.3
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 3.3e-13 78.2 81 59.3
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 3.3e-13 78.2 81 58.0
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 4.3e-13 77.8 80 57.5
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.1e-12 75.5 81 61.7
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 4.7e-12 74.3 81 51.9
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 8.1e-12 73.6 81 70.4
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 1.1e-11 73.2 82 53.7
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 1.1e-11 73.2 82 53.7
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 1.1e-11 73.2 82 61.0
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 1.1e-11 73.2 81 64.2
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 3.1e-11 71.6 81 60.5
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 5.2e-11 70.9 63 71.4
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 5.2e-11 70.9 71 69.0
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 6.8e-11 70.5 80 65.0
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 6.8e-11 70.5 64 70.3
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 6.8e-11 70.5 81 49.4
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 6.8e-11 70.5 76 56.6
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 8.9e-11 70.1 81 59.3
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 2.0e-10 68.9 82 58.5
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 3.4e-10 68.2 81 66.7
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 4.4e-10 67.8 63 63.5
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 1.7e-09 65.9 81 46.9
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 2.2e-09 65.5 80 58.8
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 2.2e-09 65.5 58 69.0
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 2.2e-09 65.5 63 61.9
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 2.2e-09 65.5 82 63.4
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 1.1e-08 63.2 76 47.4
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.4e-08 62.8 76 53.9
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 1.4e-08 62.8 82 59.8
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 7.1e-08 60.5 59 64.4
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.7e-06 55.8 60 65.0
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.7e-06 55.8 31 87.1
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 8.6e-06 53.5 79 54.4


User provided reference genes

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