Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27959_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 9.4e-59 229.9 113 100.0
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 1.1e-46 189.9 93 100.0
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 1.5e-24 116.3 98 64.3
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 9.8e-24 113.6 97 61.9
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 2.4e-22 109.0 99 60.6
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 3.5e-21 105.1 98 57.1
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 4.6e-21 104.8 87 63.2
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 4.3e-19 98.2 94 54.3
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 7.3e-19 97.4 87 60.9
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 8.0e-18 94.0 90 55.6
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 3.1e-17 92.0 86 53.5
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 6.8e-17 90.9 53 77.4
QL10p045538 Quercus lobata HOM05D005441 ORTHO05D006879 1.5e-16 89.7 54 75.9
SalBow6G5479 Salvia bowleyana HOM05D005441 ORTHO05D006879 1.5e-16 89.7 106 46.2
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 3.4e-16 88.6 87 55.2
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 4.4e-16 88.2 87 55.2
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 7.5e-16 87.4 84 57.1
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 2.2e-15 85.9 93 50.5
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 2.2e-15 85.9 82 54.9
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 2.9e-15 85.5 48 79.2
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 2.9e-15 85.5 49 75.5
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 3.7e-15 85.1 50 72.0
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 6.4e-15 84.3 51 70.6
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 6.4e-15 84.3 51 70.6
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 8.3e-15 84.0 83 56.6
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 1.4e-14 83.2 62 59.7
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 1.4e-14 83.2 51 70.6
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 1.4e-14 83.2 83 54.2
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 1.4e-14 83.2 58 63.8
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.9e-14 82.8 49 75.5
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 1.9e-14 82.8 84 51.2
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 2.4e-14 82.4 51 66.7
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 2.4e-14 82.4 51 66.7
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 2.4e-14 82.4 86 44.2
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 2.4e-14 82.4 48 75.0
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 2.4e-14 82.4 48 77.1
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 3.2e-14 82.0 46 76.1
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 4.1e-14 81.6 51 68.6
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 5.4e-14 81.3 48 72.9
QL07p005351 Quercus lobata HOM05D005441 ORTHO05D006879 5.4e-14 81.3 55 70.9
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 7.0e-14 80.9 84 51.2
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 7.0e-14 80.9 51 66.7
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 9.2e-14 80.5 48 70.8
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 9.2e-14 80.5 43 76.7
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 9.2e-14 80.5 43 76.7
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 9.2e-14 80.5 79 59.5
unitig_22.g6054 Utricularia gibba HOM05D001412 ORTHO05D002473 9.2e-14 80.5 48 70.8
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 1.2e-13 80.1 51 64.7
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.2e-13 80.1 47 74.5
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 1.2e-13 80.1 88 48.9
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 1.6e-13 79.7 86 47.7
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 1.6e-13 79.7 89 51.7
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 2.0e-13 79.3 51 64.7
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 2.0e-13 79.3 51 64.7
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 2.0e-13 79.3 51 64.7
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 2.0e-13 79.3 51 66.7
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 2.0e-13 79.3 82 50.0
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 2.0e-13 79.3 42 78.6
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.7e-13 79.0 45 68.9
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 2.7e-13 79.0 43 74.4
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 2.7e-13 79.0 94 44.7
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 2.7e-13 79.0 44 77.3
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 2.7e-13 79.0 44 77.3
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 2.7e-13 79.0 44 77.3
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 3.5e-13 78.6 52 65.4
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 4.6e-13 78.2 44 75.0
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 4.6e-13 78.2 82 51.2
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 7.8e-13 77.4 43 72.1
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.0e-12 77.0 51 60.8
Aqoxy5G02961 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.0e-12 77.0 51 60.8
SGA_v2.0_scaffold105G30361 Striga asiatica HOM05D005441 ORTHO05D006879 1.0e-12 77.0 48 64.6
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 1.0e-12 77.0 87 51.7
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.3e-12 76.6 51 60.8
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 1.3e-12 76.6 43 74.4
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 1.7e-12 76.3 57 56.1
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.7e-12 76.3 45 73.3
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 1.7e-12 76.3 88 48.9
Aqoxy1G03762 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 2.3e-12 75.9 51 58.8
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 2.3e-12 75.9 43 72.1
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 2.3e-12 75.9 44 75.0
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 3.0e-12 75.5 57 57.9
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 3.9e-12 75.1 57 57.9
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 3.9e-12 75.1 86 44.2
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 5.0e-12 74.7 49 65.3
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 6.6e-12 74.3 48 66.7
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 6.6e-12 74.3 53 62.3
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 1.9e-11 72.8 54 61.1
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 1.9e-11 72.8 59 61.0
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 1.9e-11 72.8 49 63.3
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 1.9e-11 72.8 40 82.5
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 2.5e-11 72.4 87 46.0
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 2.5e-11 72.4 51 58.8
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 3.3e-11 72.0 41 68.3
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 3.3e-11 72.0 81 45.7
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 4.3e-11 71.6 49 59.2
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 7.3e-11 70.9 42 69.0
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 7.3e-11 70.9 81 53.1
ATR0721G055 Amborella trichopoda HOM05D005441 ORTHO05D006879 9.5e-11 70.5 49 57.1
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 1.6e-10 69.7 41 65.9
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 1.6e-10 69.7 56 53.6
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 1.6e-10 69.7 47 66.0
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 1.6e-10 69.7 47 59.6
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 1.6e-10 69.7 48 62.5
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 2.8e-10 68.9 45 62.2
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 6.2e-10 67.8 92 44.6
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 8.1e-10 67.4 38 68.4
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 1.8e-09 66.2 44 61.4
Zm00001eb311530 Zea mays HOM05D005441 ORTHO05D006879 2.3e-09 65.9 43 62.8
Aqoxy1G03071 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 3.1e-09 65.5 64 43.8
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 6.8e-09 64.3 44 61.4
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 8.9e-09 63.9 44 61.4
Mapoly0006s0192 Marchantia polymorpha HOM05D005441 ORTHO05D006879 4.4e-08 61.6 82 39.0
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 4.4e-08 61.6 52 57.7
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 9.9e-08 60.5 58 51.7
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 3.7e-07 58.5 32 75.0


User provided reference genes

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