Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 3.8e-123 444.9 231 100.0
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 4.7e-105 384.8 234 88.5
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 7.7e-100 367.5 233 83.7
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.5e-98 363.2 229 85.6
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.5e-95 353.2 236 80.9
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.5e-95 353.2 236 80.9
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.2e-94 349.4 235 81.7
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 4.8e-94 348.2 235 81.3
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 4.8e-94 348.2 234 79.5
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.4e-93 345.9 236 79.7
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 7.2e-90 334.3 236 79.7
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 3.5e-84 315.5 234 73.9
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 8.6e-83 310.8 203 81.8
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 6.1e-81 304.7 231 71.4
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 2.0e-79 299.7 229 70.7
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.4e-79 298.9 228 71.9
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.8e-77 293.1 228 69.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 2.7e-76 289.3 229 68.1
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 7.8e-76 287.7 229 69.9
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.0e-75 287.3 229 70.3
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.9e-75 285.8 229 68.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.9e-75 285.8 229 68.1
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.9e-74 283.1 229 67.2
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.8e-73 279.3 229 67.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 3.6e-73 278.9 229 66.4
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.6e-73 278.9 228 66.2
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 4.7e-73 278.5 230 68.7
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 8.0e-73 277.7 229 66.4
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.0e-72 277.3 229 67.2
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.4e-72 276.9 229 67.2
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.4e-72 276.9 233 64.4
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-72 276.9 229 66.4
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-72 276.9 230 68.3
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 4.0e-72 275.4 228 65.4
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.2e-71 273.9 228 66.7
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.5e-71 273.5 224 67.0
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-71 273.5 228 66.2
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 2.0e-71 273.1 228 65.8
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.6e-71 272.7 228 64.5
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.4e-71 271.9 228 63.6
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 5.8e-71 271.6 228 64.0
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 7.5e-71 271.2 228 64.0
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.7e-70 270.0 200 71.5
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.7e-70 268.9 230 66.1
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 3.7e-70 268.9 229 64.6
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 4.9e-70 268.5 229 67.2
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 8.3e-70 267.7 228 66.2
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.1e-69 267.3 228 65.8
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-69 267.3 228 65.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 2.4e-69 266.2 228 66.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.2e-69 265.8 227 64.8
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.4e-69 265.0 230 61.7
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 5.4e-69 265.0 229 65.1
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 9.2e-69 264.2 231 63.6
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.7e-68 262.7 183 73.2
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.5e-68 262.3 229 62.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.5e-68 262.3 228 64.9
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 4.6e-68 261.9 230 63.0
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.6e-68 261.9 228 64.9
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 4.6e-68 261.9 228 63.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.0e-68 261.5 233 63.9
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.0e-68 261.5 231 64.5
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.0e-67 260.8 234 62.8
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.3e-67 259.6 235 63.4
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.0e-67 259.2 202 65.8
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 6.6e-67 258.1 231 61.9
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.9e-66 256.5 229 62.9
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.9e-66 256.5 235 60.4
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 3.3e-66 255.8 225 64.0
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.6e-66 255.0 209 65.6
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 5.6e-66 255.0 229 62.9
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 7.3e-66 254.6 230 62.6
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 9.5e-66 254.2 228 62.7
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-65 253.8 230 63.0
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.2e-65 253.8 228 62.7
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-65 253.4 228 62.7
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.6e-65 253.4 215 65.6
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 2.8e-65 252.7 229 62.9
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 2.8e-65 252.7 198 66.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.8e-65 252.7 258 58.9
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 3.6e-65 252.3 229 62.9
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.0e-65 251.1 249 58.2
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 8.0e-65 251.1 231 62.3
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.0e-65 251.1 205 66.8
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.8e-64 250.0 223 63.7
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.3e-64 249.6 232 60.3
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 4.0e-64 248.8 231 61.0
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 8.9e-64 247.7 199 64.8
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.2e-63 247.3 228 63.2
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.6e-63 246.1 220 64.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.6e-63 246.1 226 61.1
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 7.5e-63 244.6 235 59.1
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.7e-62 243.4 236 59.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.7e-62 243.4 238 58.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 3.7e-62 242.3 264 54.2
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 6.4e-62 241.5 233 60.9
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 6.4e-62 241.5 237 59.1
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 8.3e-62 241.1 162 72.8
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.1e-61 240.7 230 60.4
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.1e-61 240.7 201 64.7
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 7.0e-61 238.0 151 79.5
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 7.0e-61 238.0 237 57.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.7e-60 236.1 199 63.8
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.5e-60 235.7 233 59.7
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 4.6e-60 235.3 152 77.6
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-59 233.8 231 58.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-59 233.8 231 58.9
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.7e-59 233.4 229 59.8
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.7e-59 233.4 235 55.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 5.1e-59 231.9 228 59.6
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 6.6e-59 231.5 233 55.8
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 6.6e-59 231.5 229 58.1
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 9.5e-58 227.6 231 57.6
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-57 227.3 185 66.5
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.6e-57 226.9 151 74.8
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.6e-57 226.9 229 57.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.6e-57 226.9 229 57.2
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-57 226.5 178 65.7
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.3e-56 223.0 225 56.4
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 2.6e-55 219.5 151 76.8
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 4.1e-53 212.2 164 67.1
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 9.2e-53 211.1 231 51.5
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.5e-52 209.1 232 53.9
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.3e-51 206.5 251 50.6
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.1e-50 204.1 224 54.5
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 5.6e-50 201.8 150 70.0
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.2e-49 200.7 232 52.6
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 6.2e-49 198.4 152 66.4
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.4e-48 197.2 134 74.6
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.8e-48 196.8 215 54.4
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.9e-46 188.7 198 55.1
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.9e-45 186.8 195 53.3
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.4e-45 185.3 227 48.5
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 7.8e-44 181.4 149 63.8
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.9e-43 179.1 227 47.1
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 2.8e-41 172.9 228 45.2
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.4e-40 170.6 99 85.9
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.4e-40 169.9 127 66.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.2e-39 167.5 182 52.2
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.2e-36 157.5 104 76.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 2.5e-34 149.8 120 65.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.3e-34 149.4 141 58.9
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 9.6e-34 147.9 130 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 8.1e-33 144.8 139 56.8
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.8e-30 136.0 120 60.8
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 8.4e-30 134.8 99 65.7
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.4e-29 134.0 152 56.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.4e-29 133.3 140 51.4
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 4.2e-29 132.5 76 86.8
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 9.9e-23 111.3 71 80.3
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 6.0e-20 102.1 95 61.1
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 6.0e-20 102.1 95 61.1
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-19 100.9 64 81.2
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.0e-16 89.4 68 63.2
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 4.2e-13 79.3 103 41.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 9.3e-13 78.2 133 32.3
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 5.1e-11 72.4 105 39.0


User provided reference genes

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