Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27906_v3 Cicer arietinum L. HOM05D000832 ORTHO05D013522 1.1e-20 102.4 53 100.0
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 4.8e-13 77.0 63 68.3
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 8.1e-13 76.3 52 78.8
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 1.4e-12 75.5 63 65.1
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 1.4e-12 75.5 63 68.3
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 2.4e-12 74.7 63 68.3
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 68.3
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 3.1e-12 74.3 63 66.7
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 4.0e-12 73.9 63 68.3
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 4.0e-12 73.9 63 66.7
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 5.3e-12 73.6 63 66.7
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 6.9e-12 73.2 63 65.1
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 6.9e-12 73.2 63 65.1
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 6.9e-12 73.2 63 65.1
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 6.9e-12 73.2 63 65.1
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 9.0e-12 72.8 63 65.1
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 9.0e-12 72.8 63 65.1
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 1.2e-11 72.4 63 65.1
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 1.2e-11 72.4 63 65.1
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 1.2e-11 72.4 63 65.1
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.5e-11 72.0 63 63.5
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 1.5e-11 72.0 63 65.1
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 1.5e-11 72.0 59 67.8
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 1.5e-11 72.0 63 63.5
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 2.0e-11 71.6 63 63.5
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.0e-11 71.6 61 65.6
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 2.0e-11 71.6 59 67.8
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.0e-11 71.6 63 63.5
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 65.1
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 63.5
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 63.5
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 63.5
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 66.7
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 63.5
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 63.5
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 63.5
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 2.6e-11 71.2 63 66.7
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 3.4e-11 70.9 63 63.5
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 4.5e-11 70.5 63 65.1
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 4.5e-11 70.5 63 63.5
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 4.5e-11 70.5 63 63.5
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 4.5e-11 70.5 63 63.5
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 4.5e-11 70.5 63 63.5
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 61.9
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 63.5
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 63.5
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 63.5
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 61.9
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 61.9
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 63.5
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 5.8e-11 70.1 63 63.5
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 7.6e-11 69.7 63 61.9
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 7.6e-11 69.7 63 63.5
Psat0s1185g0040 Pisum sativum HOM05D000832 ORTHO05D000982 7.6e-11 69.7 63 65.1
Psat6g187920 Pisum sativum HOM05D000832 ORTHO05D000982 7.6e-11 69.7 63 65.1
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 7.6e-11 69.7 63 63.5
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 7.6e-11 69.7 63 63.5
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 9.9e-11 69.3 63 63.5
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 9.9e-11 69.3 61 62.3
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 1.3e-10 68.9 63 63.5
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 1.3e-10 68.9 63 61.9
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.3e-10 68.9 63 65.1
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 1.3e-10 68.9 63 61.9
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 1.7e-10 68.6 64 65.6
TPR.G39957 Trifolium pratense HOM05D000832 ORTHO05D013522 1.7e-10 68.6 60 66.7
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.7e-10 68.6 60 65.0
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 2.2e-10 68.2 63 61.9
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 2.2e-10 68.2 63 61.9
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 2.2e-10 68.2 63 60.3
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.2e-10 68.2 63 60.3
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 2.2e-10 68.2 59 62.7
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 2.2e-10 68.2 57 68.4
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 2.9e-10 67.8 59 64.4
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 2.9e-10 67.8 63 61.9
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 2.9e-10 67.8 63 61.9
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 2.9e-10 67.8 61 62.3
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 2.9e-10 67.8 63 63.5
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 2.9e-10 67.8 63 61.9
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 3.8e-10 67.4 63 60.3
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 3.8e-10 67.4 63 60.3
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 3.8e-10 67.4 63 60.3
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 3.8e-10 67.4 59 62.7
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 3.8e-10 67.4 61 62.3
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 3.8e-10 67.4 61 62.3
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 3.8e-10 67.4 61 62.3
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 3.8e-10 67.4 63 65.1
RcHm_v2.0_Chr5g0035861 Rosa chinensis HOM05D000832 ORTHO05D000982 4.9e-10 67.0 60 63.3
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 4.9e-10 67.0 63 60.3
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 6.4e-10 66.6 63 63.5
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 6.4e-10 66.6 63 60.3
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 6.4e-10 66.6 63 57.1
unitig_27.g25234 Utricularia gibba HOM05D000832 ORTHO05D000982 6.4e-10 66.6 59 62.7
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 8.4e-10 66.2 59 61.0
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 8.4e-10 66.2 63 61.9
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 8.4e-10 66.2 63 60.3
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 8.4e-10 66.2 63 63.5
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 8.4e-10 66.2 59 61.0
Sopen01g024180 Solanum pennellii HOM05D000832 ORTHO05D000982 8.4e-10 66.2 59 62.7
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 1.1e-09 65.9 63 58.7
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.1e-09 65.9 59 61.0
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 1.1e-09 65.9 63 58.7
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 1.1e-09 65.9 63 58.7
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.4e-09 65.5 59 61.0
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 1.4e-09 65.5 63 57.1
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 2.4e-09 64.7 62 59.7
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 2.4e-09 64.7 63 57.1
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 3.2e-09 64.3 59 59.3
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 3.2e-09 64.3 59 59.3
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 3.2e-09 64.3 63 58.7
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 3.2e-09 64.3 61 57.4
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.2e-09 63.9 59 59.3
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 4.2e-09 63.9 61 57.4
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 4.2e-09 63.9 63 60.3
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 5.5e-09 63.5 59 61.0
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 55.6
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 55.6
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 55.6
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 55.6
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 55.6
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 57.1
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 7.1e-09 63.2 63 58.7
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 9.3e-09 62.8 63 58.7
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 9.3e-09 62.8 63 58.7
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 9.3e-09 62.8 59 61.0
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 9.3e-09 62.8 59 59.3
CBR_g51453 Chara braunii HOM05D000832 ORTHO05D000982 1.6e-08 62.0 63 54.0
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 2.7e-08 61.2 59 57.6
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 2.7e-08 61.2 63 54.0
RcHm_v2.0_Chr5g0035501 Rosa chinensis HOM05D000832 ORTHO05D025157 3.5e-08 60.8 60 56.7
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 6.0e-08 60.1 33 81.8
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 2.3e-07 58.2 61 52.5
Psat7g057440 Pisum sativum HOM05D000832 ORTHO05D013522 6.7e-07 56.6 33 84.8
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 8.7e-07 56.2 59 55.9


User provided reference genes

Program Settings