Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27660_v3 Cicer arietinum L. HOM05D003065 ORTHO05D020103 2.0e-49 198.7 97 100.0
Ca_19102_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 1.1e-47 193.0 97 97.9
TPR.G19041 Trifolium pratense HOM05D003065 ORTHO05D003802 1.6e-19 99.4 97 58.8
Psat7g195560 Pisum sativum HOM05D003065 ORTHO05D003802 4.2e-15 84.7 153 39.2
Ca_19100_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 5.1e-13 77.8 152 36.2
Lj3g0026585 Lotus japonicus HOM05D003065 ORTHO05D003802 1.5e-12 76.3 97 49.5
VMungo1127G1760 Vigna mungo HOM05D003065 ORTHO05D003802 1.5e-12 76.3 152 34.9
Phvul.011G106000 Phaseolus vulgaris HOM05D003065 ORTHO05D003802 1.3e-11 73.2 149 32.9
VMungo1127G1794 Vigna mungo HOM05D003065 ORTHO05D003802 2.8e-11 72.0 92 45.7
VMungo1127G1692 Vigna mungo HOM05D003065 ORTHO05D003802 3.7e-11 71.6 101 47.5
arahy.Tifrunner.gnm1.ann1.Y3QZTF Arachis hypogaea HOM05D003065 ORTHO05D003802 1.1e-10 70.1 162 33.3
Medtr6g055230 Medicago truncatula HOM05D003065 ORTHO05D003802 9.0e-10 67.0 78 51.3
Lj3g0014705 Lotus japonicus HOM05D003065 ORTHO05D003802 1.2e-09 66.6 161 34.2
Medtr4g046707 Medicago truncatula HOM05D003065 ORTHO05D003802 3.4e-09 65.1 57 52.6
Thecc.02G162000 Theobroma cacao HOM05D003065 ORTHO05D003802 3.4e-09 65.1 57 52.6
Lj3g0025078 Lotus japonicus HOM05D003065 ORTHO05D003802 4.5e-09 64.7 65 52.3
Duzib248G1274 Durio zibethinus HOM05D003065 ORTHO05D003802 7.6e-09 63.9 50 54.0
COL.COLO4_12981 Corchorus olitorius HOM05D003065 ORTHO05D003802 1.0e-08 63.5 53 54.7
Lalb_Chr03g0028881 Lupinus albus HOM05D003065 ORTHO05D003802 2.9e-08 62.0 37 73.0
Lalb_Chr01g0005571 Lupinus albus HOM05D003065 ORTHO05D003802 3.8e-08 61.6 39 69.2
MD17G1093000 Malus domestica HOM05D003065 ORTHO05D003802 3.8e-08 61.6 54 53.7
Thhalv10007929m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 6.5e-08 60.8 41 61.0
Glyma.12G101300 Glycine max HOM05D003065 ORTHO05D003802 6.5e-08 60.8 154 32.5
Aa31LG1G19430 Aethionema arabicum HOM05D003065 ORTHO05D003802 8.5e-08 60.5 43 60.5
Gohir.A13G059500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 8.5e-08 60.5 45 57.8
AT1G05270 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 1.4e-07 59.7 41 61.0
Ciclev10015457m.g Citrus clementina HOM05D003065 ORTHO05D003802 1.4e-07 59.7 60 45.0
Gohir.D13G062500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 1.4e-07 59.7 49 55.1
Gorai.013G071000 Gossypium raimondii HOM05D003065 ORTHO05D003802 1.4e-07 59.7 49 55.1
Oeu003067.1 Olea europaea HOM05D003065 ORTHO05D003802 1.4e-07 59.7 54 51.9
CARHR126150 Cardamine hirsuta HOM05D003065 ORTHO05D003802 1.9e-07 59.3 41 58.5
Carub.0001s0456 Capsella rubella HOM05D003065 ORTHO05D003802 2.5e-07 58.9 52 50.0
Manes.13G072700 Manihot esculenta HOM05D003065 ORTHO05D003802 2.5e-07 58.9 41 63.4
THA.LOC104800983 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 2.5e-07 58.9 38 63.2
TPR.G19036 Trifolium pratense HOM05D003065 ORTHO05D003802 2.5e-07 58.9 58 55.2
TAR626G0646 Trochodendron aralioides HOM05D003065 ORTHO05D003802 3.2e-07 58.5 74 41.9
AL1G15050 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 4.2e-07 58.2 38 60.5
C03p36680 Brassica napus HOM05D003065 ORTHO05D020103 4.2e-07 58.2 54 44.4
BolC3t15982H Brassica oleracea HOM05D003065 ORTHO05D020103 4.2e-07 58.2 54 44.4
BolC5t29129H Brassica oleracea HOM05D003065 ORTHO05D003802 4.2e-07 58.2 54 44.4
CANSAT64G1715 Cannabis sativa HOM05D003065 ORTHO05D003802 4.2e-07 58.2 59 49.2
CARHR004740 Cardamine hirsuta HOM05D003065 ORTHO05D003802 4.2e-07 58.2 51 49.0
Lj8A123T53 Lonicera japonica HOM05D003065 ORTHO05D003802 4.2e-07 58.2 53 52.8
CiPaw.04G117500 Carya illinoinensis HOM05D003065 ORTHO05D003802 5.5e-07 57.8 50 52.0
CsaV3_2G035170 Cucumis sativus L. HOM05D003065 ORTHO05D003802 5.5e-07 57.8 41 61.0
Nitab4.5_0001176g0140 Nicotiana tabacum HOM05D003065 ORTHO05D003802 5.5e-07 57.8 42 61.9
PGR142G1323 Punica granatum HOM05D003065 ORTHO05D003802 5.5e-07 57.8 57 52.6
QL08p033752 Quercus lobata HOM05D003065 ORTHO05D003802 5.5e-07 57.8 41 63.4
AT2G32340 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 7.2e-07 57.4 38 60.5
BcaB02g10475 Brassica carinata HOM05D003065 ORTHO05D003802 7.2e-07 57.4 41 58.5
Carub.0004s1369 Capsella rubella HOM05D003065 ORTHO05D003802 7.2e-07 57.4 38 60.5
MD09G1105400 Malus domestica HOM05D003065 ORTHO05D003802 7.2e-07 57.4 54 51.9
Prupe.3G220000 Prunus persica HOM05D003065 ORTHO05D003802 7.2e-07 57.4 42 59.5
PGSC0003DMG400026175 Solanum tuberosum HOM05D003065 ORTHO05D003802 7.2e-07 57.4 55 45.5
MSTRG.14153 Avicennia marina HOM05D003065 ORTHO05D003802 9.3e-07 57.0 51 51.0
CiPaw.03G162600 Carya illinoinensis HOM05D003065 ORTHO05D003802 9.3e-07 57.0 41 56.1
Migut.H01221 Erythranthe guttata HOM05D003065 ORTHO05D003802 9.3e-07 57.0 50 50.0
Peaxi162Scf00007g01221 Petunia axillaris HOM05D003065 ORTHO05D003802 9.3e-07 57.0 39 59.0
BcaC05g24399 Brassica carinata HOM05D003065 ORTHO05D003802 1.2e-06 56.6 42 52.4
C05p03480 Brassica napus HOM05D003065 ORTHO05D003802 1.2e-06 56.6 42 52.4
MELO3C019237.2 Cucumis melo HOM05D003065 ORTHO05D003802 1.2e-06 56.6 41 58.5
Nitab4.5_0005894g0020 Nicotiana tabacum HOM05D003065 ORTHO05D003802 1.2e-06 56.6 42 59.5
Sopen07g026170 Solanum pennellii HOM05D003065 ORTHO05D003802 1.2e-06 56.6 55 43.6
CSS0049428 Camellia sinensis var. sinensis HOM05D003065 ORTHO05D003802 1.6e-06 56.2 39 59.0
ECA233G0914 Erigeron canadensis HOM05D003065 ORTHO05D003802 1.6e-06 56.2 43 53.5
Nn1g07002 Nelumbo nucifera HOM05D003065 ORTHO05D003802 1.6e-06 56.2 38 63.2
AL125U10034 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 2.1e-06 55.8 43 53.5
PGR142G3240 Punica granatum HOM05D003065 ORTHO05D003802 2.1e-06 55.8 57 50.9
GSVIVG01030621001 Vitis vinifera HOM05D003065 ORTHO05D003802 2.1e-06 55.8 56 46.4
Actinidia30511 Actinidia chinensis HOM05D003065 ORTHO05D003802 2.7e-06 55.5 53 45.3
A10p03780 Brassica napus HOM05D003065 ORTHO05D003802 2.7e-06 55.5 42 52.4
BraA10t42653Z Brassica rapa HOM05D003065 ORTHO05D003802 2.7e-06 55.5 42 52.4
Sp1g04125 Schrenkiella parvula HOM05D003065 ORTHO05D003802 2.7e-06 55.5 37 62.2
Sp4g14710 Schrenkiella parvula HOM05D003065 ORTHO05D003802 2.7e-06 55.5 41 53.7
BcaB05g23732 Brassica carinata HOM05D003065 ORTHO05D003802 3.6e-06 55.1 53 49.1
Cpa.g.sc8.233 Carica papaya HOM05D003065 ORTHO05D003802 3.6e-06 55.1 41 58.5
Cfa014437 Carpinus fangiana HOM05D003065 ORTHO05D003802 3.6e-06 55.1 43 55.8
CDE05G1053 Ceratophyllum demersum HOM05D003065 ORTHO05D003802 3.6e-06 55.1 38 63.2
Thhalv10002878m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 3.6e-06 55.1 38 57.9
BcaC07g36852 Brassica carinata HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 53.7
BcaC07g42139 Brassica carinata HOM05D003065 ORTHO05D003802 4.6e-06 54.7 38 55.3
A03p18140 Brassica napus HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 58.5
A08p36480 Brassica napus HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 53.7
C08p01860 Brassica napus HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 53.7
BolC8t46984H Brassica oleracea HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 53.7
BolC8t52711H Brassica oleracea HOM05D003065 ORTHO05D003802 4.6e-06 54.7 38 55.3
BraA03t11073Z Brassica rapa HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 58.5
BraA08t35551Z Brassica rapa HOM05D003065 ORTHO05D003802 4.6e-06 54.7 41 53.7
BraA09t42082Z Brassica rapa HOM05D003065 ORTHO05D003802 4.6e-06 54.7 38 55.3
Solyc12g005780.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 4.6e-06 54.7 39 56.4
Sopen12g001710 Solanum pennellii HOM05D003065 ORTHO05D003802 4.6e-06 54.7 39 56.4
PGSC0003DMG400024333 Solanum tuberosum HOM05D003065 ORTHO05D003802 4.6e-06 54.7 39 56.4
ATR0794G140 Amborella trichopoda HOM05D003065 ORTHO05D003802 6.1e-06 54.3 40 50.0
A05p13140 Brassica napus HOM05D003065 ORTHO05D003802 6.1e-06 54.3 41 56.1
FAN09G0800 Fragaria x ananassa HOM05D003065 ORTHO05D003802 6.1e-06 54.3 40 57.5
Hma1.2p1_0613F.1_g189150 Hydrangea macrophylla HOM05D003065 ORTHO05D003802 6.1e-06 54.3 42 57.1
Lsat_1_v5_gn_8_129420 Lactuca sativa HOM05D003065 ORTHO05D003802 6.1e-06 54.3 34 61.8
vmacro09325 Vaccinium macrocarpon HOM05D003065 ORTHO05D003802 6.1e-06 54.3 41 53.7


User provided reference genes

Program Settings