Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.1e-104 383.6 239 100.0
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.1e-52 209.9 179 87.2
Ca_10866_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.5e-45 186.4 151 92.7
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 7.3e-45 184.9 179 61.5
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 1.1e-43 181.0 179 57.5
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.8e-42 175.3 229 52.0
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 9.3e-40 167.9 183 56.8
Ca_03868_v3 Cicer arietinum L. HOM05D000047 ORTHO05D000044 1.5e-37 160.6 220 49.5
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.5e-37 160.6 192 65.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 1.1e-35 154.5 179 67.6
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 4.0e-35 152.5 172 62.8
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 4.0e-35 152.5 172 62.8
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 2.9e-33 146.4 179 59.8
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 3.1e-27 126.3 162 46.9
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 5.3e-27 125.6 179 63.1
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 1.3e-25 120.9 179 61.5
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.7e-25 120.6 172 60.5
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 8.4e-25 118.2 179 60.3
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 7.9e-23 111.7 181 41.4
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 7.4e-21 105.1 180 38.9
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 3.7e-20 102.8 178 56.7
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 4.8e-20 102.4 178 55.6
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 6.2e-20 102.1 178 48.9
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 6.2e-20 102.1 178 51.7
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.4e-19 100.9 176 40.9
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.4e-19 100.9 178 44.9
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.8e-19 100.5 179 40.2
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.0e-19 99.4 179 50.3
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 4.0e-19 99.4 184 44.0
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 5.3e-19 99.0 178 38.8
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 1.2e-18 97.8 179 39.1
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 2.0e-18 97.1 178 37.1
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.0e-18 97.1 179 40.2
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.6e-18 96.7 179 49.2
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 2.6e-18 96.7 176 40.3
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 7.6e-18 95.1 176 36.9
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.3e-17 94.4 179 35.2
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.3e-17 94.4 176 36.9
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.3e-17 94.4 172 37.2
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.2e-17 93.6 176 36.9
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 2.2e-17 93.6 179 52.0
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.8e-17 92.8 178 51.1
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 3.8e-17 92.8 179 51.4
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 6.5e-17 92.0 178 35.4
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 8.4e-17 91.7 179 37.4
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 8.4e-17 91.7 181 47.5
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 1.4e-16 90.9 180 37.8
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.4e-16 90.9 181 48.1
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.9e-16 90.5 176 35.8
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 7.9e-15 85.1 178 45.5
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 7.9e-15 85.1 173 49.7
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.0e-14 84.7 176 35.2
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 3.0e-14 83.2 179 50.8
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 8.7e-14 81.6 179 46.4
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 3.3e-13 79.7 180 32.2
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 3.3e-13 79.7 120 45.0
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 4.3e-13 79.3 176 33.5
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 5.7e-13 79.0 178 47.8
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 1.3e-12 77.8 169 36.7
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 1.3e-12 77.8 179 49.7
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.3e-12 77.8 174 46.0
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.6e-12 77.4 180 42.2
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 2.2e-12 77.0 180 42.2
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.2e-12 77.0 178 42.1
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 8.2e-12 75.1 171 50.3
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.1e-11 74.7 93 41.9
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.4e-11 73.6 174 51.1
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.1e-11 73.2 180 41.7
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 6.9e-11 72.0 178 43.3
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.5e-10 70.9 38 92.1
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.5e-10 70.9 179 44.1
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 3.4e-10 69.7 38 89.5
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.0e-09 68.2 168 41.7
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.3e-09 67.8 37 89.2
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.7e-09 67.4 179 44.7
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 2.2e-09 67.0 38 86.8
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 3.8e-09 66.2 168 41.7
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 3.8e-09 66.2 38 86.8
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 8.5e-09 65.1 178 30.3
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 1.1e-08 64.7 38 81.6
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 1.4e-08 64.3 38 78.9
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 1.4e-08 64.3 38 78.9
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 1.9e-08 63.9 160 31.9
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 3.2e-08 63.2 181 31.5
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 3.2e-08 63.2 38 81.6
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 4.2e-08 62.8 43 72.1
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 4.2e-08 62.8 49 59.2
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 4.2e-08 62.8 169 46.7
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 5.5e-08 62.4 38 78.9
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 5.5e-08 62.4 38 78.9
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 5.5e-08 62.4 38 78.9
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 5.5e-08 62.4 38 78.9
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 5.5e-08 62.4 84 36.9
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 5.5e-08 62.4 38 76.3
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 7.2e-08 62.0 127 44.9
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 7.2e-08 62.0 173 44.5
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 9.4e-08 61.6 38 73.7
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 9.4e-08 61.6 38 76.3
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 9.4e-08 61.6 49 67.3
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 9.4e-08 61.6 38 78.9
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 9.4e-08 61.6 38 78.9
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 1.2e-07 61.2 38 78.9
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 1.6e-07 60.8 38 73.7
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 1.6e-07 60.8 38 73.7
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 1.6e-07 60.8 38 76.3
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.6e-07 60.8 38 76.3
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.6e-07 60.8 38 76.3
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 2.1e-07 60.5 38 76.3
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 2.1e-07 60.5 37 75.7
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 2.1e-07 60.5 38 73.7
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 2.1e-07 60.5 38 73.7
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 2.1e-07 60.5 38 76.3
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 2.1e-07 60.5 38 73.7
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 2.1e-07 60.5 59 57.6
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 2.1e-07 60.5 38 73.7
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 2.7e-07 60.1 38 76.3
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 2.7e-07 60.1 155 49.7
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 3.6e-07 59.7 38 73.7
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 3.6e-07 59.7 37 78.4
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 4.6e-07 59.3 38 76.3
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 6.1e-07 58.9 38 73.7
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 6.1e-07 58.9 38 73.7
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 6.1e-07 58.9 38 73.7
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 6.1e-07 58.9 122 33.6
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 7.9e-07 58.5 38 76.3
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 7.9e-07 58.5 221 36.2
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 1.0e-06 58.2 38 73.7
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 1.0e-06 58.2 38 71.1
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 1.0e-06 58.2 38 73.7
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 71.1
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 71.1
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 71.1
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 71.1
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 73.7
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 73.7
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 73.7
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.4e-06 57.8 179 30.2
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 68.4
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 1.4e-06 57.8 38 73.7
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 68.4
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 71.1
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.8e-06 57.4 38 73.7
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 2.3e-06 57.0 38 71.1
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 2.3e-06 57.0 38 68.4
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 2.3e-06 57.0 38 71.1
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 2.3e-06 57.0 38 71.1
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 3.0e-06 56.6 38 71.1
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 3.0e-06 56.6 38 71.1
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 3.0e-06 56.6 38 71.1
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 3.9e-06 56.2 38 71.1
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 3.9e-06 56.2 38 71.1
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 5.1e-06 55.8 37 70.3
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 5.1e-06 55.8 38 68.4
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 6.7e-06 55.5 45 62.2
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 6.7e-06 55.5 45 62.2
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 8.8e-06 55.1 37 67.6
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 8.8e-06 55.1 38 71.1
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 8.8e-06 55.1 38 71.1


User provided reference genes

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