Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.7e-122 442.2 252 100.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.5e-75 286.2 260 71.9
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.0e-72 276.6 260 66.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.4e-70 269.6 264 65.2
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 9.4e-51 204.5 257 56.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.2e-50 204.1 256 53.1
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.2e-43 179.1 259 47.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-42 177.6 263 47.9
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 8.0e-42 174.9 262 47.3
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 5.2e-41 172.2 258 47.7
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.5e-40 170.6 281 50.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.0e-40 170.2 257 51.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.9e-27 127.1 113 62.8
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.5e-27 126.7 112 65.2
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 7.3e-27 125.2 165 49.1
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.6e-26 124.0 112 63.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.6e-26 124.0 165 49.1
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.1e-26 123.6 113 61.1
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.8e-26 123.2 165 49.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.6e-26 122.9 112 60.7
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.7e-26 122.5 165 48.5
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 4.7e-26 122.5 111 62.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 4.7e-26 122.5 112 60.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.1e-26 122.1 159 49.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 8.0e-26 121.7 112 62.5
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 8.0e-26 121.7 159 49.1
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 8.0e-26 121.7 159 49.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.0e-25 121.3 173 48.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.0e-25 121.3 167 49.7
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.3e-25 120.2 106 63.2
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 2.3e-25 120.2 106 63.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.3e-25 120.2 156 50.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.1e-25 119.8 108 63.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.0e-25 119.4 112 60.7
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.2e-25 119.0 111 61.3
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.2e-25 119.0 106 61.3
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 6.8e-25 118.6 111 60.4
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 8.9e-25 118.2 111 59.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 8.9e-25 118.2 113 63.7
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 8.9e-25 118.2 112 59.8
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.2e-24 117.9 175 44.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.5e-24 117.5 112 60.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.5e-24 117.5 112 60.7
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.5e-24 117.5 108 58.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.6e-24 116.7 165 45.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.6e-24 116.7 112 56.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.6e-24 116.7 112 60.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.4e-24 116.3 108 62.0
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.4e-24 115.9 114 60.5
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 4.4e-24 115.9 108 60.2
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 5.8e-24 115.5 114 59.6
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 9.8e-24 114.8 251 39.4
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-23 114.4 163 47.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.3e-23 114.4 169 45.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-23 114.0 108 60.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.7e-23 114.0 108 62.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.2e-23 113.6 111 58.6
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.7e-23 112.8 159 44.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.7e-23 112.8 158 44.9
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.7e-23 112.8 108 61.1
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.7e-23 112.8 158 46.8
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.9e-23 112.5 99 59.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.3e-23 111.7 106 62.3
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 8.3e-23 111.7 142 51.4
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 8.3e-23 111.7 165 44.8
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-22 111.3 159 44.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.4e-22 110.9 278 36.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.9e-22 110.5 143 51.7
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.9e-22 110.5 112 53.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.9e-22 110.5 111 55.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.4e-22 110.2 109 56.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.4e-22 110.2 111 55.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 5.4e-22 109.0 105 61.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.0e-22 108.6 271 35.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 9.2e-22 108.2 321 33.3
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 9.2e-22 108.2 105 61.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 9.2e-22 108.2 112 57.1
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.2e-22 108.2 169 42.6
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.6e-21 107.5 315 31.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.7e-21 106.7 259 40.9
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.7e-21 106.7 159 45.3
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.7e-21 106.7 283 35.0
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.5e-21 106.3 221 38.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.5e-21 106.3 152 46.7
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.0e-21 105.5 112 53.6
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.0e-20 104.8 289 35.3
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.0e-20 104.8 171 44.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.3e-20 104.4 112 51.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.7e-20 104.0 165 43.6
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.0e-20 103.2 126 48.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.0e-20 102.4 305 32.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 6.6e-20 102.1 103 53.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.6e-20 102.1 111 49.5
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 6.6e-20 102.1 155 45.2
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 8.6e-20 101.7 103 53.4
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 8.6e-20 101.7 112 56.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.6e-20 101.7 113 51.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 8.6e-20 101.7 113 49.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.1e-19 101.3 112 55.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-19 101.3 111 48.6
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.1e-19 101.3 109 56.9
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.9e-19 100.5 278 33.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.9e-19 100.5 139 42.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.3e-19 99.8 159 44.7
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 4.3e-19 99.4 112 49.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.6e-19 99.0 110 48.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 7.3e-19 98.6 112 49.1
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 9.5e-19 98.2 137 40.9
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.5e-19 98.2 112 50.0
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 9.5e-19 98.2 278 32.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.5e-19 98.2 276 31.5
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.2e-18 97.8 278 32.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-18 97.4 285 32.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-18 97.1 105 51.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-18 97.1 105 51.4
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.8e-18 96.7 108 50.0
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.8e-18 96.7 236 36.9
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.6e-18 96.3 271 36.5
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 3.6e-18 96.3 108 49.1
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 3.6e-18 96.3 108 49.1
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 8.0e-18 95.1 296 30.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 8.0e-18 95.1 98 56.1
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.1e-17 94.7 169 40.2
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.1e-17 93.2 74 67.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 6.8e-17 92.0 293 31.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.2e-16 91.3 222 36.0
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.5e-16 90.9 87 57.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.4e-16 89.7 271 33.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.4e-16 89.7 300 31.7
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.4e-16 89.7 160 40.0
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.4e-16 89.4 252 32.9
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.4e-16 89.4 291 32.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.4e-16 89.4 272 32.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 5.8e-16 89.0 95 51.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.8e-16 89.0 297 30.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.3e-15 87.8 74 63.5
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-15 87.8 107 46.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.7e-15 87.4 273 31.9
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 8.3e-15 85.1 92 51.1
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.1e-14 84.7 268 33.6
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.4e-14 84.3 264 32.2
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-13 80.5 276 30.8
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-13 80.5 276 30.8
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.1e-13 80.5 276 30.8
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 3.5e-13 79.7 97 48.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.6e-13 79.3 102 48.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 7.8e-13 78.6 96 41.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-12 77.8 94 51.1
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-12 77.4 94 51.1
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-12 77.4 94 51.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-12 77.0 94 51.1
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-12 77.0 94 51.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.3e-12 77.0 93 48.4
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.0e-12 76.6 74 56.8
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 9.5e-11 71.6 66 57.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.6e-10 70.9 228 28.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.6e-10 70.9 247 27.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.6e-10 69.7 79 51.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 6.2e-10 68.9 85 43.5
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.1e-09 68.2 125 38.4
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.5e-08 64.3 92 40.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.7e-07 60.8 178 33.7
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.7e-07 60.8 178 33.7
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 2.2e-07 60.5 244 27.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.2e-06 56.6 227 26.0


User provided reference genes

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