Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.2e-169 599.7 299 100.0
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.3e-102 377.1 302 69.9
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 1.5e-100 370.2 294 68.7
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 5.3e-85 318.5 295 62.4
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 2.5e-82 309.7 297 62.0
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 3.7e-78 295.8 288 59.0
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 2.2e-75 286.6 289 58.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 8.5e-75 284.6 310 55.2
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 3.3e-71 272.7 297 53.5
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 5.7e-71 271.9 283 54.1
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 4.1e-69 265.8 289 52.2
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 1.0e-67 261.2 295 52.9
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 5.5e-66 255.4 283 50.2
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 1.7e-62 243.8 301 46.8
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 4.8e-62 242.3 282 47.2
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.2e-60 237.7 290 46.9
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 3.5e-60 236.1 288 46.9
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 3.2e-58 229.6 286 46.2
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 9.4e-58 228.0 295 45.8
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.4e-56 224.2 233 57.1
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 4.8e-54 215.7 289 43.9
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.1e-53 214.5 293 43.7
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.1e-53 214.5 305 43.9
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 9.1e-53 211.5 309 42.4
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 2.0e-52 210.3 287 43.9
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 4.5e-52 209.1 300 42.3
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 5.9e-52 208.8 290 42.1
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.3e-51 207.6 301 42.5
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 3.3e-50 203.0 294 40.8
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 7.2e-50 201.8 291 42.3
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 7.2e-50 201.8 288 40.6
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 2.1e-49 200.3 289 39.8
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.1e-49 200.3 289 39.8
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 6.1e-49 198.7 291 41.9
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 6.8e-48 195.3 290 41.7
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.5e-47 194.1 289 39.4
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 7.5e-47 191.8 298 39.3
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.3e-46 191.0 295 40.0
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.7e-46 190.7 281 41.3
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.2e-46 190.3 298 39.3
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.8e-46 189.9 297 40.1
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 3.7e-46 189.5 302 41.1
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 7.8e-44 181.8 294 37.8
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 9.5e-42 174.9 286 38.8
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 2.1e-41 173.7 259 37.8
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 3.6e-41 172.9 259 38.2
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 6.1e-41 172.2 287 37.6
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.1e-41 172.2 309 35.0
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 2.3e-40 170.2 293 34.5
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 3.1e-40 169.9 309 35.9
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 3.1e-40 169.9 293 37.2
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 4.0e-40 169.5 268 38.8
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 5.2e-40 169.1 296 34.1
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 6.8e-40 168.7 313 34.8
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 3.4e-39 166.4 313 33.9
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 4.4e-39 166.0 299 35.5
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 5.8e-39 165.6 299 38.8
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 1.3e-38 164.5 124 68.5
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 3.7e-38 162.9 284 38.4
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 3.7e-38 162.9 299 35.8
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.1e-37 161.4 290 33.4
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 9.2e-37 158.3 295 34.6
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 9.2e-37 158.3 295 34.6
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.2e-36 157.9 295 33.2
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 3.5e-36 156.4 289 37.4
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 4.6e-36 156.0 298 34.2
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 7.8e-36 155.2 297 38.0
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 7.8e-36 155.2 292 36.3
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.3e-35 154.5 292 34.9
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 1.7e-35 154.1 306 35.6
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 3.0e-35 153.3 291 36.8
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 3.9e-35 152.9 293 33.8
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 3.9e-35 152.9 281 35.2
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 1.2e-33 147.9 297 34.3
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 1.6e-33 147.5 289 34.6
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 2.1e-33 147.1 287 33.8
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 6.2e-33 145.6 283 35.0
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 6.2e-33 145.6 288 33.3
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 2.3e-32 143.7 285 34.4
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.2e-31 141.4 287 32.4
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.5e-31 141.0 299 32.4
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 7.5e-31 138.7 299 34.1
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 1.7e-30 137.5 298 34.6
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 1.7e-30 137.5 311 30.2
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 4.9e-30 136.0 280 33.6
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 4.9e-30 136.0 112 67.9
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 6.4e-30 135.6 280 36.8
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-29 134.8 238 36.1
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.1e-29 134.8 270 33.0
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 3.2e-29 133.3 290 34.5
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.1e-29 132.9 286 32.5
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 5.4e-29 132.5 297 34.7
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 9.2e-29 131.7 286 34.6
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 2.5e-26 123.6 296 32.4
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 3.6e-25 119.8 293 34.1
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 8.1e-25 118.6 296 30.4
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.8e-24 117.5 283 30.7
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.8e-24 117.5 335 30.1
TPR.G40619 Trifolium pratense HOM05D007109 ORTHO05D008813 2.3e-24 117.1 99 66.7
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 6.8e-24 115.5 301 29.9
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 8.9e-24 115.2 263 30.8
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.2e-23 114.8 295 31.2
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 9.9e-23 111.7 295 30.2
TPR.G21941 Trifolium pratense HOM05D007109 ORTHO05D008813 2.1e-20 104.0 94 62.8
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 5.1e-19 99.4 107 52.3
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.5e-15 87.8 105 43.8
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.7e-11 74.3 173 31.2
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.5e-10 70.5 77 46.8
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.5e-10 70.5 77 46.8
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 1.8e-08 64.3 311 24.1
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 6.9e-08 62.4 124 29.8
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 1.2e-07 61.6 315 22.5
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 2.6e-07 60.5 314 25.8
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 3.4e-07 60.1 324 23.5
CSS0042224 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 4.4e-07 59.7 309 22.0
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 4.4e-07 59.7 273 23.4
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 7.6e-07 58.9 311 21.5
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 7.6e-07 58.9 324 22.8
Lj7P509T23 Lonicera japonica HOM05D002440 ORTHO05D002576 7.6e-07 58.9 312 25.3
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 1.3e-06 58.2 312 23.4
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 2.2e-06 57.4 334 22.5
CSS0035560 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 2.9e-06 57.0 320 21.6
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 2.9e-06 57.0 315 24.1
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 3.8e-06 56.6 306 24.5
Sed0022646 Sechium edule HOM05D002440 ORTHO05D002576 4.9e-06 56.2 302 21.5
Oeu018967.1 Olea europaea HOM05D002440 ORTHO05D002576 6.4e-06 55.8 198 25.3
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 8.4e-06 55.5 286 24.5


User provided reference genes

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