Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 2.7e-46 188.3 96 100.0
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 5.4e-39 164.1 97 87.6
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 5.4e-39 164.1 91 89.0
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.0e-33 145.6 99 75.8
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.9e-32 141.7 98 73.5
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 1.2e-30 136.3 99 71.7
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.9e-28 129.0 95 68.4
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.9e-28 129.0 95 68.4
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.3e-28 128.3 86 80.2
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 7.3e-28 127.1 90 68.9
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 7.5e-25 117.1 95 62.1
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 2.9e-24 115.2 72 76.4
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 5.1e-21 104.4 100 55.0
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.1e-20 103.2 93 59.1
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.9e-20 102.4 93 54.8
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.3e-20 101.7 92 53.3
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.3e-20 101.7 88 59.1
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.3e-20 101.3 102 52.0
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 5.6e-20 100.9 80 62.5
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 5.6e-20 100.9 91 57.1
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 7.3e-20 100.5 84 60.7
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 9.5e-20 100.1 97 52.6
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 9.5e-20 100.1 102 51.0
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.6e-19 99.4 84 58.3
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.6e-19 99.4 82 62.2
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 2.1e-19 99.0 83 60.2
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 2.8e-19 98.6 85 52.9
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 3.6e-19 98.2 80 56.2
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 4.7e-19 97.8 89 56.2
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.7e-19 97.8 102 50.0
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.4e-18 96.3 84 54.8
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.8e-18 95.9 94 53.2
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 4.0e-18 94.7 90 54.4
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 4.0e-18 94.7 75 64.0
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.2e-17 93.2 90 54.4
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.5e-17 92.8 99 49.5
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 2.0e-17 92.4 78 56.4
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 3.4e-17 91.7 94 52.1
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 4.4e-17 91.3 79 57.0
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 1.3e-16 89.7 101 46.5
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.7e-16 89.4 83 53.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.7e-16 89.4 75 58.7
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 2.2e-16 89.0 81 55.6
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 2.2e-16 89.0 77 61.0
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 2.2e-16 89.0 77 62.3
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 2.9e-16 88.6 79 57.0
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.9e-16 88.6 83 53.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 3.7e-16 88.2 83 51.8
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 3.7e-16 88.2 90 53.3
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.9e-16 87.8 94 48.9
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.4e-15 86.3 98 48.0
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.9e-15 85.9 83 49.4
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 1.9e-15 85.9 50 86.0
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 2.4e-15 85.5 97 45.4
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 4.1e-15 84.7 97 45.4
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 7.1e-15 84.0 81 51.9
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 9.2e-15 83.6 96 51.0
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 9.2e-15 83.6 82 48.8
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 3.5e-14 81.6 74 55.4
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 6.0e-14 80.9 79 50.6
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 6.0e-14 80.9 83 49.4
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 7.8e-14 80.5 74 55.4
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.3e-13 79.7 84 50.0
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.7e-13 79.3 75 53.3
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 1.7e-13 79.3 100 44.0
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 2.3e-13 79.0 74 51.4
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.3e-13 79.0 79 51.9
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 2.3e-13 79.0 90 46.7
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 3.9e-13 78.2 98 45.9
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 3.9e-13 78.2 79 49.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 6.6e-13 77.4 90 46.7
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 8.6e-13 77.0 79 50.6
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 1.5e-12 76.3 69 58.0
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 2.5e-12 75.5 85 50.6
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 3.3e-12 75.1 74 54.1
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 3.3e-12 75.1 71 56.3
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 7.3e-12 73.9 74 51.4
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.2e-11 73.2 68 54.4
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.1e-11 72.4 74 51.4
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 3.6e-11 71.6 109 37.6
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.7e-11 71.2 79 49.4
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 4.7e-11 71.2 96 45.8
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 4.7e-11 71.2 58 58.6
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.2e-11 70.9 101 41.6
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.2e-11 70.9 101 41.6
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 6.2e-11 70.9 58 56.9
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 6.2e-11 70.9 58 56.9
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 6.2e-11 70.9 58 56.9
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 8.1e-11 70.5 101 40.6
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 8.1e-11 70.5 101 40.6
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 1.4e-10 69.7 71 53.5
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.4e-10 69.7 101 40.6
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-10 69.7 101 40.6
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-10 69.7 101 40.6
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 2.4e-10 68.9 80 47.5
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 4.0e-10 68.2 96 45.8
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 4.0e-10 68.2 75 48.0
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 6.8e-10 67.4 92 39.1
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 8.9e-10 67.0 72 48.6
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.2e-09 66.6 50 66.0
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.5e-09 66.2 92 39.1
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.8e-09 64.3 60 53.3
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 5.8e-09 64.3 60 53.3
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 9.9e-09 63.5 77 51.9
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 9.9e-09 63.5 60 55.0
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 8.4e-08 60.5 74 44.6
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.1e-07 60.1 54 57.4
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.9e-07 59.3 69 44.9
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 7.1e-07 57.4 73 43.8
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 7.1e-07 57.4 73 43.8
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 9.3e-07 57.0 71 46.5
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 6.0e-06 54.3 80 35.0


User provided reference genes

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