Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.4e-146 523.5 650 100.0
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.4e-146 523.5 650 100.0
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 5.9e-113 412.5 656 91.3
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 3.8e-104 383.3 652 86.7
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 4.2e-103 379.8 650 83.8
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 1.2e-73 282.0 648 82.9
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.6e-60 237.7 617 63.0
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.1e-57 228.0 609 76.2
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.3e-56 225.3 617 61.8
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 1.7e-56 224.9 604 73.7
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 3.9e-56 223.8 609 78.2
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 6.6e-56 223.0 605 72.9
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 8.6e-56 222.6 605 72.9
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 8.6e-56 222.6 605 72.9
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.1e-55 222.2 624 75.6
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 7.3e-55 219.5 608 76.5
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 7.3e-55 219.5 604 73.2
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 7.3e-55 219.5 656 77.4
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 9.5e-55 219.2 608 76.3
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 4.7e-54 216.9 611 71.0
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-53 215.7 620 67.7
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 6.8e-53 213.0 620 69.4
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 7.6e-52 209.5 617 70.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 4.7e-46 190.3 620 77.4
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.7e-43 181.8 174 56.3
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 3.8e-43 180.6 128 81.2
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 3.8e-43 180.6 129 69.0
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.8e-43 180.6 174 55.7
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 1.4e-42 178.7 176 55.1
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.9e-42 178.3 606 68.2
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 1.2e-41 175.6 643 74.2
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 2.1e-41 174.9 173 53.8
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 1.0e-40 172.6 204 47.5
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 2.3e-40 171.4 127 80.3
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 3.9e-40 170.6 173 53.2
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 5.1e-40 170.2 204 48.0
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.9e-39 168.3 178 49.4
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 4.3e-39 167.2 604 76.0
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 5.6e-39 166.8 181 50.8
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 7.3e-39 166.4 185 50.3
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 9.6e-39 166.0 129 66.7
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.6e-38 164.1 174 53.4
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 6.2e-38 163.3 183 51.4
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 1.1e-37 162.5 645 63.3
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.1e-37 162.5 171 53.2
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 3.1e-37 161.0 226 43.4
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 5.3e-37 160.2 214 45.8
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.2e-36 159.1 604 72.8
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 3.4e-36 157.5 179 50.3
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 1.3e-35 155.6 196 44.9
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 8.4e-35 152.9 228 43.0
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 3.2e-34 151.0 110 80.0
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.2e-34 150.6 213 45.1
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 1.2e-33 149.1 218 43.1
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 1.6e-33 148.7 109 78.9
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 2.7e-33 147.9 110 78.2
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 3.5e-33 147.5 202 46.0
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 4.6e-33 147.1 109 78.9
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 4.6e-33 147.1 109 78.0
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 7.9e-33 146.4 236 41.9
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 1.0e-32 146.0 203 46.3
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 1.9e-31 141.7 209 44.5
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 4.3e-31 140.6 106 78.3
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 5.6e-31 140.2 146 52.7
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 9.6e-31 139.4 199 44.2
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 3.6e-30 137.5 172 46.5
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 1.4e-29 135.6 185 43.8
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 1.4e-29 135.6 157 51.6
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.8e-29 135.2 103 78.6
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 4.0e-29 134.0 189 40.2
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 6.9e-29 133.3 193 46.1
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 9.0e-29 132.9 147 49.0
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 1.3e-27 129.0 179 45.3
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 2.9e-27 127.9 98 77.6
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 2.9e-27 127.9 123 54.5
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 8.4e-27 126.3 145 51.0
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 1.4e-26 125.6 197 41.6
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 4.2e-26 124.0 188 43.1
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 5.5e-26 123.6 132 50.8
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 7.1e-26 123.2 97 76.3
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 7.1e-26 123.2 175 42.3
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 2.7e-25 121.3 105 59.0
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 2.3e-24 118.2 197 38.6
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 5.1e-24 117.1 184 40.8
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 5.1e-24 117.1 189 37.6
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 8.7e-24 116.3 108 55.6
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 8.7e-24 116.3 199 40.2
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 1.5e-23 115.5 94 63.8
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 2.5e-23 114.8 190 41.1
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 4.3e-23 114.0 171 40.9
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 9.6e-23 112.8 92 72.8
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 9.6e-23 112.8 110 55.5
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 9.6e-23 112.8 191 39.3
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 2.8e-22 111.3 92 60.9
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 2.4e-21 108.2 105 53.3
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 2.4e-21 108.2 185 42.2
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 4.0e-21 107.5 86 77.9
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 2.0e-20 105.1 75 88.0
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 5.8e-20 103.6 84 77.4
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 1.0e-19 102.8 86 76.7
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 1.0e-19 102.8 84 61.9
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 2.9e-19 101.3 85 72.9
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 2.1e-17 95.1 80 75.0
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 6.0e-17 93.6 87 58.6
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 6.3e-14 83.6 84 70.2
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 1.4e-13 82.4 86 66.3
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.6e-12 76.6 56 66.1
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 1.9e-10 72.0 88 45.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.6e-09 68.9 60 56.7
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 2.1e-09 68.6 85 61.2
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 5.1e-08 63.9 221 26.2
CAN.G388.40 Capsicum annuum HOM05D000104 ORTHO05D009920 5.7e-07 60.5 139 31.7
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 5.7e-07 60.5 114 33.3
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 5.7e-07 60.5 218 25.2
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 5.7e-07 60.5 179 30.7
SalBow5G5686 Salvia bowleyana HOM05D000104 ORTHO05D009920 2.2e-06 58.5 192 26.6
C04p66310 Brassica napus HOM05D000104 ORTHO05D009920 2.8e-06 58.2 142 31.0
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 2.8e-06 58.2 135 30.4
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 6.3e-06 57.0 164 28.0
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 6.3e-06 57.0 216 27.3
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 6.3e-06 57.0 217 27.6


User provided reference genes

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