Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.8e-57 225.7 117 100.0
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 3.3e-51 204.9 115 91.3
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.4e-51 204.5 114 90.4
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 4.4e-51 204.5 114 92.1
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.7e-50 202.6 113 91.2
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.8e-50 201.8 113 91.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 90.3
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 4.8e-50 201.1 115 90.4
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.1e-49 199.9 115 89.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.1e-49 199.9 115 89.6
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.1e-49 199.9 115 89.6
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 88.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-49 199.1 115 89.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.8e-49 199.1 115 89.6
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 1.8e-49 199.1 115 88.7
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.8e-49 199.1 115 89.6
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 115 88.7
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 115 88.7
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 88.5
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.1e-49 198.4 115 88.7
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.1e-49 198.4 115 88.7
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.1e-49 198.4 115 88.7
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 3.1e-49 198.4 113 89.4
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 4.1e-49 198.0 115 88.7
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.1e-49 198.0 110 90.9
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.3e-49 197.6 115 87.8
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 5.3e-49 197.6 115 87.8
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 5.3e-49 197.6 115 87.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 89.4
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.0e-48 195.7 115 87.0
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 2.7e-48 195.3 115 85.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.5e-48 194.9 113 87.6
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.5e-48 194.9 110 88.2
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 88.5
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 7.7e-48 193.7 117 85.5
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.9e-47 191.8 117 84.6
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.9e-47 191.8 117 85.5
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 84.6
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 84.6
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 6.5e-47 190.7 116 82.8
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 8.5e-47 190.3 117 83.8
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 85.8
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 85.0
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 85.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.5e-46 189.5 114 85.1
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.5e-46 189.5 116 82.8
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.5e-46 189.5 116 82.8
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.9e-46 189.1 114 83.3
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.9e-46 189.1 114 85.1
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.9e-46 189.1 117 83.8
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 2.5e-46 188.7 116 82.8
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 83.8
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.2e-46 188.3 117 83.8
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 3.2e-46 188.3 114 85.1
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 3.2e-46 188.3 114 86.0
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 3.2e-46 188.3 118 84.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 85.0
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 3.2e-46 188.3 114 83.3
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 3.2e-46 188.3 114 86.0
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 85.8
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 4.2e-46 188.0 113 85.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.2e-46 188.0 114 84.2
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.2e-46 188.0 114 84.2
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.2e-46 188.0 114 86.0
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 5.5e-46 187.6 114 83.3
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 5.5e-46 187.6 114 84.2
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 7.2e-46 187.2 117 82.9
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 7.2e-46 187.2 117 82.1
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.2e-46 187.2 114 84.2
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 84.1
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 84.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 83.6
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 7.2e-46 187.2 113 85.0
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 9.4e-46 186.8 114 83.3
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 9.4e-46 186.8 114 84.2
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 9.4e-46 186.8 114 85.1
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 9.4e-46 186.8 114 84.2
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 84.1
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 82.9
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 83.2
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 85.0
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.6e-45 186.0 117 81.2
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.6e-45 186.0 117 81.2
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.6e-45 186.0 117 81.2
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.1e-45 185.7 113 84.1
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.1e-45 185.7 114 83.3
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.1e-45 185.7 113 81.4
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.1e-45 185.7 117 79.5
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.1e-45 185.7 117 83.8
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.1e-45 185.7 114 81.6
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.7e-45 185.3 113 83.2
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 2.7e-45 185.3 116 81.9
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 3.6e-45 184.9 117 81.2
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 84.1
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.7e-45 184.5 114 82.5
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 4.7e-45 184.5 116 82.8
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 6.1e-45 184.1 114 83.3
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 6.1e-45 184.1 113 82.3
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 6.1e-45 184.1 113 83.2
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 8.0e-45 183.7 111 83.8
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.0e-44 183.3 114 82.5
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 84.1
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.0e-44 183.3 114 82.5
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.4e-44 183.0 113 82.3
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.4e-44 183.0 117 80.3
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.4e-44 183.0 117 80.3
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.8e-44 182.6 117 79.5
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-44 182.2 114 82.5
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-44 182.2 114 82.5
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.3e-44 182.2 114 82.5
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.3e-44 182.2 113 81.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.3e-44 182.2 113 81.4
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.8e-44 180.3 114 81.6
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.2e-43 179.9 115 82.6
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.5e-43 179.5 113 81.4
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.5e-43 179.5 113 81.4
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 2.0e-43 179.1 105 85.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 4.4e-43 177.9 114 79.8
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.3e-42 176.4 105 85.7
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 3.7e-42 174.9 111 79.3
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 3.7e-42 174.9 115 73.0
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.8e-42 174.5 114 78.9
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 6.3e-42 174.1 111 79.3
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.3e-42 173.7 113 77.9
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 1.1e-41 173.3 117 75.2
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.1e-41 173.3 113 77.9
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 4.1e-41 171.4 123 74.0
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.6e-40 169.5 109 77.1
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.0e-39 166.8 149 63.8
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.1e-38 163.3 199 51.8
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.8e-37 158.7 89 88.8
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.2e-35 153.3 89 84.3
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.6e-35 152.1 107 71.0
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.6e-35 152.1 86 89.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 3.7e-34 148.3 87 88.5
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.1e-33 146.7 118 70.3
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.8e-33 146.0 88 83.0
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 5.0e-31 137.9 106 71.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 9.5e-30 133.7 81 81.5
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 9.5e-30 133.7 88 75.0
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 9.5e-30 133.7 99 71.7
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 2.1e-29 132.5 72 86.1
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.6e-29 131.7 73 89.0
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 4.7e-29 131.3 105 66.7
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 4.7e-29 131.3 105 66.7
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.7e-29 131.3 67 95.5
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 2.3e-28 129.0 85 76.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 4.0e-28 128.3 82 79.3
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.1e-25 120.2 106 53.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.2e-24 116.7 82 76.8
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 1.7e-23 112.8 76 68.4
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-21 106.3 71 77.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.8e-21 105.5 70 80.0
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.7e-21 104.8 70 80.0
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 6.2e-21 104.4 73 71.2
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.0e-21 104.0 83 68.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 9.8e-19 97.1 107 57.0
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.7e-15 86.3 47 89.4
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 2.6e-11 72.4 50 76.0
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.1e-09 67.0 49 73.5
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 1.1e-09 67.0 42 81.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 5.4e-09 64.7 44 77.3
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 5.4e-09 64.7 44 77.3
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.5e-06 56.6 59 59.3
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 3.3e-06 55.5 42 73.8


User provided reference genes

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