Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 9.8e-203 709.9 358 100.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.5e-179 632.9 345 93.3
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 8.1e-173 610.5 381 83.7
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 8.9e-172 607.1 342 89.2
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.0e-167 593.6 342 87.4
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.7e-167 592.8 344 86.3
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 6.6e-167 590.9 342 86.0
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.9e-166 589.3 344 85.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.1e-158 563.5 342 83.0
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 7.6e-155 550.8 309 90.0
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 2.2e-146 522.7 345 75.9
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 6.5e-146 521.2 354 75.7
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.5e-142 509.2 346 74.6
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.5e-142 509.2 387 69.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.2e-141 506.1 345 73.3
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.3e-141 504.6 348 75.0
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 8.2e-141 504.2 345 73.0
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 3.1e-140 502.3 345 72.5
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 5.3e-140 501.5 345 73.3
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 9.0e-140 500.7 346 74.3
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.6e-139 499.2 348 74.4
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 3.4e-139 498.8 343 72.6
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.2e-138 496.1 399 65.4
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.5e-137 492.7 343 71.7
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 4.2e-137 491.9 348 73.0
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 5.5e-137 491.5 364 70.6
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.6e-136 490.0 344 70.1
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.6e-136 488.8 350 69.4
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.9e-136 487.6 350 69.1
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.8e-135 486.5 346 69.7
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 6.7e-135 484.6 343 70.6
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.9e-134 483.0 373 69.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 3.3e-134 482.3 342 70.8
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 5.7e-134 481.5 358 70.9
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 5.7e-134 481.5 348 68.7
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.2e-133 479.6 345 71.0
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 4.8e-133 478.4 350 68.3
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 6.3e-133 478.0 328 72.6
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 5.3e-132 474.9 346 70.2
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 6.9e-132 474.6 345 69.6
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.5e-131 473.4 342 70.2
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.5e-131 473.4 346 70.5
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.0e-131 473.0 344 68.3
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 5.9e-131 471.5 345 71.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 5.0e-130 468.4 342 69.3
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 6.5e-130 468.0 441 57.8
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.4e-129 466.8 346 70.8
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 4.2e-129 465.3 345 69.3
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.7e-128 462.6 343 68.2
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 3.6e-128 462.2 362 66.0
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 3.6e-128 462.2 393 63.4
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.6e-128 462.2 392 63.3
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.0e-127 460.7 392 62.5
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.3e-127 459.5 356 66.3
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 2.6e-126 456.1 343 67.6
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 3.1e-124 449.1 346 66.5
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.5e-123 446.8 383 61.6
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 2.0e-123 446.4 364 62.1
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.6e-123 446.0 343 67.1
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.2e-122 443.0 382 61.5
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 2.2e-122 443.0 365 64.1
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 2.9e-122 442.6 391 61.9
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 2.9e-122 442.6 392 61.0
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.1e-121 440.7 355 65.4
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 4.2e-121 438.7 315 70.8
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 7.2e-121 438.0 400 58.5
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.6e-120 436.8 385 61.0
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 1.6e-120 436.8 395 60.3
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 2.1e-120 436.4 345 65.2
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 2.1e-120 436.4 392 60.7
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 8.0e-120 434.5 390 60.8
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 1.4e-119 433.7 389 60.7
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 6.7e-119 431.4 316 69.6
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 8.8e-119 431.0 317 68.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 8.8e-119 431.0 390 60.5
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 8.8e-119 431.0 310 68.1
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.5e-118 430.3 389 60.4
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 2.6e-118 429.5 363 63.6
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 2.6e-118 429.5 384 60.2
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 5.7e-118 428.3 315 68.6
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 6.3e-117 424.9 387 59.2
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 8.2e-117 424.5 362 60.8
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 1.1e-116 424.1 409 56.0
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 4.1e-116 422.2 432 54.2
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 5.3e-116 421.8 381 58.5
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 5.3e-116 421.8 381 58.5
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 8.5e-114 414.5 350 60.9
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.9e-113 413.3 359 60.7
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.2e-112 410.6 388 58.0
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 3.6e-112 409.1 354 60.7
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 3.6e-112 409.1 320 64.4
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.0e-111 406.0 351 59.0
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.5e-110 403.7 349 62.2
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 9.7e-110 401.0 344 62.5
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.7e-110 401.0 342 62.6
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.7e-110 401.0 342 62.9
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 9.7e-110 401.0 356 61.2
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.7e-109 400.2 342 62.6
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.4e-108 397.1 342 62.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.1e-108 396.0 342 62.0
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 4.1e-108 395.6 354 59.3
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 6.5e-106 388.3 343 58.3
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.9e-105 386.7 344 59.3
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 7.5e-102 374.8 352 58.8
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 7.0e-100 368.2 305 59.7
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.2e-97 359.0 352 54.8
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-96 357.5 278 65.1
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.2e-96 357.5 278 65.1
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 4.0e-95 352.4 333 55.0
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 6.3e-93 345.1 270 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 8.9e-87 324.7 401 47.1
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.3e-85 320.9 214 74.3
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 8.3e-85 318.2 294 54.8
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 7.3e-81 305.1 226 68.6
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.1e-76 289.3 350 50.3
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.0e-76 288.5 215 68.8
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.6e-70 270.0 217 64.5
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.5e-57 227.6 390 36.7
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 9.0e-55 218.4 269 46.5
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.6e-51 206.1 150 66.0
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 4.5e-46 189.5 139 69.8
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.1e-44 182.2 128 71.9
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.1e-43 180.6 136 64.0
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.3e-42 177.9 126 73.0
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.3e-41 172.9 130 70.0
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.1e-40 170.6 115 73.0
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.3e-25 119.8 79 73.4
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 3.6e-19 100.1 72 66.7
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.4e-15 88.2 72 68.1
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 6.9e-15 85.9 131 42.7
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.5e-14 84.7 346 22.3
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 9.4e-12 75.5 73 58.9
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 2.0e-09 67.8 40 85.0
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.0e-06 57.8 52 59.6


User provided reference genes

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