Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2263.0 1157 100.0
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2187.1 1159 96.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 2168.3 1159 95.7
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2118.2 1160 93.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2107.8 1162 93.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 2100.5 1159 92.9
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 2100.5 1159 92.4
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2098.6 1161 92.7
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2074.3 1165 91.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2070.0 1161 91.5
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2064.7 1172 90.6
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2018.8 1167 87.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2010.7 1173 87.1
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2007.6 1172 87.4
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 2003.4 1163 87.9
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2003.0 1167 87.3
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1999.6 1166 87.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1998.0 1162 86.8
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1991.5 1166 87.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1991.1 1173 86.2
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1987.2 1166 86.6
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1983.4 1167 86.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1983.0 1167 86.2
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1983.0 1166 86.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1982.6 1165 86.4
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1980.3 1160 86.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1977.6 1165 86.2
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1977.2 1164 86.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1977.2 1172 85.8
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1973.4 1166 85.9
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1968.7 1169 86.0
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1967.6 1164 85.8
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1167 85.9
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1965.7 1174 85.8
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1965.7 1170 85.6
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1963.7 1175 85.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1958.0 1172 85.2
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1957.6 1172 85.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1956.4 1172 85.2
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1954.9 1165 84.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1954.1 1169 85.4
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1952.2 1171 84.9
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1948.7 1165 85.4
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1947.2 1171 84.5
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1944.9 1173 83.9
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1943.3 1168 84.1
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1940.2 1175 84.1
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1938.3 1203 82.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1937.5 1197 83.7
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1934.8 1165 84.0
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1932.9 1165 84.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1927.5 1164 84.2
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1926.4 1170 82.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1926.4 1164 84.0
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1211 81.7
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1922.9 1177 83.3
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1169 83.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1919.1 1172 83.3
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1091 88.2
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1916.0 1173 82.9
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1181 81.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1184 81.8
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1909.0 1164 83.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1908.6 1167 83.1
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1905.6 1164 84.4
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1905.2 1178 82.6
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1182 82.1
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1176 82.7
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1902.9 1170 82.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1174 82.5
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1901.3 1174 82.3
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1901.3 1174 82.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1899.0 1168 82.6
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1897.1 1170 82.2
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1896.7 1182 81.8
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1894.4 1163 82.7
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1158 81.9
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1888.6 1193 80.9
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1888.6 1162 82.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1885.2 1169 81.7
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1872.1 1165 81.6
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1871.3 1209 79.3
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1870.9 1099 85.0
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1867.0 1150 83.0
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1857.8 1169 81.5
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1847.8 1102 83.9
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1835.1 1179 80.4
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1825.4 1194 79.9
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1810.0 1324 72.8
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1803.5 1159 78.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1776.9 1170 77.3
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1770.0 1168 76.1
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1739.2 935 95.0
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1733.0 1147 77.8
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1718.7 1156 75.2
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1693.3 1163 73.6
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1637.5 1158 70.7
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1621.3 996 82.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1618.6 1151 75.1
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1616.7 1160 70.7
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1460.3 847 87.6
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1442.6 1157 63.5
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1429.1 1158 64.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1411.0 838 84.6
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1401.0 1153 63.1
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1390.9 1155 62.8
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1367.8 1169 60.6
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1349.3 799 85.2
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1268.1 798 79.7
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1225.7 780 78.7
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1114.4 695 82.0
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1099.0 913 61.7
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 1.1e-303 1047.0 1186 46.3
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 6.9e-298 1027.7 651 79.0
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 9.3e-287 990.7 593 84.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.6e-286 989.9 576 87.8
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.5e-284 983.4 743 70.7
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.9e-276 956.4 546 89.6
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.4e-274 949.5 599 82.0
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.6e-260 902.9 627 73.7
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.4e-260 901.4 520 84.0
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 3.0e-216 756.5 476 79.4
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 5.0e-216 755.7 465 80.2
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.6e-206 723.0 440 83.6
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 4.8e-166 589.7 357 86.8
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.1e-154 552.0 354 79.7
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.9e-114 418.3 274 77.7
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 6.8e-112 409.8 379 55.7
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 6.4e-86 323.6 195 82.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.6e-63 248.4 168 80.4
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 9.3e-45 186.8 143 69.9
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.3e-43 183.0 117 83.8
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 2.6e-39 168.7 103 84.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.7e-38 166.0 109 79.8
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 3.6e-36 158.3 87 86.2
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 4.6e-36 157.9 78 94.9
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.8e-33 148.7 96 81.2
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.8e-17 95.5 74 63.5
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.3e-17 94.4 74 62.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.1e-16 92.0 51 84.3
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 5.3e-16 91.3 90 63.3
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.6e-15 89.7 84 60.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.0e-15 89.4 51 80.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.6e-15 89.0 51 82.4
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.5e-07 61.6 393 25.4
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 5.0e-06 58.2 57 52.6
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 6.5e-06 57.8 37 70.3


User provided reference genes

Program Settings