Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.7e-249 865.5 429 100.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.7e-132 476.9 433 62.6
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.0e-129 466.1 429 61.8
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.0e-121 441.0 428 58.6
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 9.5e-120 434.5 429 57.8
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 6.4e-116 421.8 430 57.4
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.4e-115 420.6 429 58.0
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.4e-115 419.9 430 58.1
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 9.5e-112 407.9 430 56.0
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.8e-110 403.7 428 55.6
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 4.4e-101 372.5 429 51.5
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.5e-96 357.5 429 50.6
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.6e-95 352.8 428 50.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.8e-95 352.4 429 50.8
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 4.0e-94 349.4 430 50.5
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 9.0e-94 348.2 428 47.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.6e-93 346.7 429 50.6
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.6e-93 346.7 429 50.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.4e-93 346.3 429 50.3
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.4e-93 346.3 418 50.5
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.3e-92 344.4 429 50.3
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 2.2e-92 343.6 428 49.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 8.4e-92 341.7 430 49.5
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.1e-91 341.3 435 49.4
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.4e-91 340.1 427 49.9
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.2e-91 339.7 426 49.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 5.4e-91 339.0 427 47.8
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.7e-90 336.7 427 49.4
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 4.6e-90 335.9 429 49.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 6.0e-90 335.5 428 49.5
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 6.0e-90 335.5 427 48.7
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.0e-89 334.7 429 49.0
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-88 331.3 421 48.5
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.3e-88 329.7 417 48.0
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 4.3e-88 329.3 427 48.2
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.3e-87 327.8 427 46.1
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 3.7e-87 326.2 427 46.8
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.7e-87 326.2 418 46.9
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 4.8e-87 325.9 424 47.2
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 6.2e-87 325.5 432 47.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.4e-86 324.3 432 47.9
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.8e-86 323.9 428 45.8
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 6.9e-86 322.0 418 45.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 9.0e-86 321.6 431 47.6
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.6e-85 320.1 418 45.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.4e-85 319.7 428 46.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 4.5e-85 319.3 434 48.6
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.3e-84 317.8 429 46.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.2e-84 317.0 417 45.8
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.2e-84 317.0 417 45.8
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.9e-84 316.6 430 46.3
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.8e-84 316.2 429 47.1
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 8.4e-84 315.1 439 46.2
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.2e-83 313.2 420 46.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 5.5e-83 312.4 428 46.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.5e-82 309.7 426 44.6
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 7.9e-82 308.5 429 44.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.0e-81 308.1 430 45.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.3e-81 307.0 427 43.8
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.3e-81 307.0 427 43.8
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.9e-81 306.2 427 44.0
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 4.3e-80 302.8 419 45.3
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 9.6e-80 301.6 425 43.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.6e-79 300.8 434 44.5
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 8.2e-79 298.5 432 44.2
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.1e-78 298.1 428 45.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.4e-78 297.7 425 44.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.8e-78 297.4 433 45.0
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.4e-78 297.0 427 43.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 5.3e-78 295.8 428 44.4
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 9.0e-78 295.0 419 44.9
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.2e-77 294.7 433 44.3
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.4e-77 293.1 428 44.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 7.6e-77 292.0 434 43.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 7.6e-77 292.0 423 44.0
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.7e-76 290.8 425 43.8
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.1e-75 288.1 431 44.1
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.4e-75 287.7 423 43.0
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.9e-75 287.3 427 43.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.8e-73 280.8 420 42.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.8e-73 280.8 426 43.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.0e-73 280.0 421 43.0
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.7e-73 278.5 428 41.6
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 5.7e-72 275.8 425 42.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.4e-72 275.4 430 42.6
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.6e-71 274.2 424 42.9
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.3e-71 272.3 428 42.3
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.2e-71 271.9 428 42.3
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.4e-70 271.2 428 42.5
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.8e-70 270.8 421 42.3
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 3.1e-70 270.0 408 43.4
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.1e-70 269.6 427 41.5
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.1e-70 269.6 433 41.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 9.0e-70 268.5 421 41.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-69 268.1 421 42.0
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.2e-69 268.1 412 41.7
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.0e-69 267.3 426 41.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 4.5e-69 266.2 421 41.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 4.5e-69 266.2 421 41.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.5e-69 266.2 415 41.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.0e-68 265.0 425 41.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.2e-68 263.8 414 40.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 5.0e-68 262.7 167 80.2
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.4e-67 261.2 417 40.8
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 9.4e-67 258.5 427 40.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.6e-66 257.7 420 41.0
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-66 256.9 427 39.3
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.0e-65 253.4 423 41.1
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 9.7e-64 248.4 425 40.5
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-62 245.0 433 40.0
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-62 245.0 432 39.4
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.4e-62 244.6 433 40.0
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 5.9e-61 239.2 433 39.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 8.5e-60 235.3 432 38.2
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.2e-59 233.4 433 38.3
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.6e-58 231.1 445 37.8
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.6e-58 229.9 427 37.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.4e-57 228.0 431 37.1
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 3.9e-57 226.5 431 38.3
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-56 224.9 427 36.1
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.5e-56 224.6 361 40.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.6e-56 223.8 427 35.8
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 4.4e-56 223.0 427 35.6
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.2e-52 210.7 415 34.7
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 8.5e-52 208.8 148 79.1
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.8e-49 201.1 359 39.0
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-46 191.8 140 72.1
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.2e-45 188.3 359 37.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.5e-45 186.8 138 73.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.4e-43 178.7 142 68.3
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 6.1e-42 176.0 361 32.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 4.0e-41 173.3 141 66.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 4.1e-30 136.7 344 31.4
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.6e-24 117.5 134 53.0
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 2.2e-23 114.4 136 46.3
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 4.1e-22 110.2 346 27.5
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 4.1e-22 110.2 116 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.4e-17 95.1 270 26.7
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.0e-13 81.3 79 55.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.5e-11 74.3 65 53.8


User provided reference genes

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