Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 3.3e-270 934.5 476 100.0
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 2.2e-258 895.2 476 95.8
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.5e-254 882.5 473 93.7
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 9.8e-251 869.8 476 92.6
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 2.8e-245 851.7 477 90.8
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 9.2e-241 836.6 476 89.1
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.3e-239 832.8 476 89.5
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 2.1e-237 825.5 476 88.4
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 1.1e-230 803.1 476 86.6
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 2.4e-220 768.8 479 81.2
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 1.7e-218 762.7 477 80.7
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 6.4e-218 760.8 472 81.1
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 2.4e-217 758.8 479 80.4
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.2e-217 758.4 472 81.1
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 5.5e-217 757.7 479 80.2
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 7.1e-217 757.3 479 80.4
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.9e-215 751.5 474 80.2
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 1.9e-214 749.2 412 92.7
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 9.0e-212 740.3 479 78.7
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 2.0e-211 739.2 478 79.3
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.0e-210 736.9 478 77.0
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 3.8e-210 734.9 479 78.7
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 3.8e-210 734.9 479 78.3
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.1e-209 733.4 480 79.2
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 7.1e-209 730.7 479 77.7
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.2e-208 729.9 478 78.9
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 2.1e-208 729.2 479 77.7
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 8.7e-207 723.8 479 77.7
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 4.3e-206 721.5 515 72.6
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 7.4e-206 720.7 475 78.5
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 2.8e-205 718.8 476 76.7
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 4.8e-205 718.0 479 76.4
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 8.2e-205 717.2 479 76.4
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 5.3e-204 714.5 476 77.1
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 6.9e-204 714.1 479 76.4
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 2.0e-203 712.6 479 75.8
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 2.6e-203 712.2 495 74.1
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 3.4e-203 711.8 479 75.6
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.7e-202 709.5 479 75.6
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.2e-202 709.1 479 75.6
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 5.0e-202 708.0 478 76.2
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 2.5e-201 705.7 480 75.0
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 7.2e-201 704.1 479 75.6
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.3e-199 699.9 481 74.0
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 3.9e-199 698.4 477 74.6
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.1e-199 698.0 479 74.3
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 1.1e-198 696.8 480 74.6
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.5e-198 696.4 477 73.8
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.5e-198 696.4 479 73.9
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 5.7e-198 694.5 477 74.0
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.3e-197 693.3 485 73.0
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 2.8e-197 692.2 485 72.8
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.8e-197 692.2 485 72.6
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 3.7e-197 691.8 477 73.4
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 6.3e-197 691.0 477 74.0
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 6.3e-197 691.0 415 86.5
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 1.1e-196 690.3 480 71.5
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.1e-196 690.3 477 74.4
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.1e-196 690.3 481 73.8
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 1.8e-196 689.5 485 72.4
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.5e-195 686.4 479 73.9
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 2.6e-195 685.6 423 81.8
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.5e-195 684.9 479 73.5
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 7.7e-195 684.1 478 73.0
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.0e-194 683.7 510 68.8
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 1.7e-194 682.9 470 74.0
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 8.5e-194 680.6 479 74.5
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 1.4e-193 679.9 479 72.9
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 3.2e-193 678.7 479 72.4
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 2.7e-192 675.6 477 71.5
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 2.7e-192 675.6 477 71.5
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 2.7e-192 675.6 477 71.5
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 3.6e-192 675.2 477 71.1
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.0e-191 673.7 477 71.1
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 5.1e-191 671.4 477 71.7
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 5.1e-191 671.4 477 71.3
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 1.1e-190 670.2 477 72.7
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 1.5e-187 659.8 477 70.9
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 2.0e-187 659.4 477 71.3
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 2.6e-187 659.1 477 71.1
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.3e-186 656.8 477 69.8
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 2.3e-183 646.0 473 73.2
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 4.8e-181 638.3 533 63.6
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 5.9e-179 631.3 486 67.7
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 5.5e-177 624.8 476 67.6
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 2.7e-176 622.5 476 68.9
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.1e-174 617.1 477 68.1
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 4.8e-173 611.7 478 67.6
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 6.3e-173 611.3 477 67.3
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 4.1e-172 608.6 483 66.5
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 7.0e-172 607.8 477 67.5
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.7e-171 605.9 442 72.4
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 3.5e-171 605.5 479 67.6
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 2.9e-170 602.4 423 71.6
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 3.2e-169 599.0 375 81.1
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 3.2e-169 599.0 477 65.8
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 2.1e-168 596.3 496 64.9
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 1.4e-167 593.6 577 56.8
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 4.8e-165 585.1 375 80.8
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.3e-157 560.5 383 74.2
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.8e-156 556.6 376 72.9
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.5e-150 537.0 484 59.1
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 2.2e-149 533.1 338 79.3
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.2e-139 500.7 477 56.8
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.5e-134 481.5 311 78.8
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 2.6e-126 456.4 809 38.4
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.7e-125 453.8 310 74.8
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 2.2e-125 453.4 376 60.1
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.1e-124 451.1 345 67.0
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 3.3e-121 439.5 478 51.5
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 7.1e-116 421.8 246 87.4
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 1.9e-113 413.7 449 52.6
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.8e-112 409.8 449 51.9
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.1e-111 406.4 450 50.7
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 2.9e-109 399.8 228 89.0
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.6e-107 394.0 450 50.9
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.7e-107 393.3 452 50.9
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.8e-106 390.6 240 84.2
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 3.9e-106 389.4 446 50.2
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 8.7e-106 388.3 470 48.1
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 7.4e-105 385.2 446 49.6
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 4.5e-102 375.9 446 49.6
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 7.6e-102 375.2 444 47.7
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 6.0e-99 365.5 374 52.9
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 7.9e-99 365.2 374 52.7
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 2.5e-97 360.1 407 49.4
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 8.2e-96 355.1 422 48.3
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 5.1e-90 335.9 499 41.9
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 3.9e-82 309.7 448 44.9
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 7.4e-81 305.4 250 63.2
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 4.2e-76 289.7 498 37.6
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 4.2e-60 236.5 314 45.2
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 7.7e-54 215.7 176 65.9
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.1e-52 211.8 203 55.7
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 3.2e-44 183.7 431 31.6
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 2.1e-43 181.0 203 48.8
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 1.8e-39 167.9 514 29.4
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 2.8e-35 154.1 102 75.5
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.2e-32 144.4 106 69.8
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 4.7e-19 100.1 90 54.4
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 1.0e-13 82.4 142 35.2
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 2.8e-11 74.3 62 66.1
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 5.4e-07 60.1 593 19.7
PRCOL_00005117 Prasinoderma coloniale HOM05D001663 ORTHO05D005717 9.2e-07 59.3 303 24.8
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 9.2e-07 59.3 84 35.7
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 1.2e-06 58.9 141 36.9


User provided reference genes

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