Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.1e-257 892.9 469 100.0
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 8.0e-245 850.1 469 94.7
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 2.3e-244 848.6 469 94.0
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.3e-244 848.6 468 95.5
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.6e-243 845.1 468 94.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 4.8e-242 840.9 469 93.6
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 6.3e-234 813.9 468 90.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 9.1e-233 810.1 469 90.2
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.6e-232 809.3 468 90.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.7e-232 808.5 469 89.8
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.5e-232 808.1 469 90.0
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-231 806.2 469 90.0
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.8e-231 804.7 470 88.5
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 8.5e-231 803.5 469 88.7
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 3.2e-230 801.6 469 88.9
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.2e-230 801.6 469 88.7
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.2e-229 799.7 469 88.7
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.6e-229 799.3 469 88.9
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 8.0e-229 797.0 469 88.5
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.0e-228 796.6 469 88.3
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 2.3e-228 795.4 469 87.2
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 2.3e-228 795.4 469 88.1
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 6.8e-228 793.9 469 88.5
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 8.8e-228 793.5 470 87.4
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.5e-227 792.7 469 88.1
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.5e-227 792.7 469 86.4
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.0e-227 792.3 471 87.9
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.6e-227 792.0 469 87.0
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.6e-227 792.0 469 88.3
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 2.6e-227 792.0 469 88.3
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 4.4e-227 791.2 469 88.5
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.7e-227 790.8 469 87.4
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 9.8e-227 790.0 469 87.4
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.2e-226 788.9 469 88.1
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.8e-226 788.5 468 88.7
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.7e-226 788.1 469 88.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.8e-226 787.7 469 87.8
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.1e-225 786.6 469 87.4
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 86.4
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 86.4
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 3.1e-225 785.0 469 87.0
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 4.1e-225 784.6 469 86.1
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 5.4e-225 784.3 506 82.4
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 5.4e-225 784.3 506 82.6
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 7.7e-224 780.4 469 86.6
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.3e-223 779.6 493 83.6
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 5.0e-223 777.7 469 86.4
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 4.2e-222 774.6 469 85.3
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.2e-221 773.1 470 85.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.8e-221 771.9 470 85.3
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.6e-221 771.5 470 85.7
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 6.1e-221 770.8 469 87.6
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 6.1e-221 770.8 469 85.1
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.4e-220 769.6 469 84.9
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.4e-220 769.6 464 86.6
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.8e-220 769.2 469 84.9
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 6.8e-220 767.3 469 84.6
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 6.8e-220 767.3 469 84.6
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 6.8e-220 767.3 470 85.3
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.9e-220 766.9 469 84.9
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.5e-219 766.1 469 84.6
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 3.4e-219 765.0 470 84.7
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 3.4e-219 765.0 469 84.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.4e-219 764.6 469 84.4
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 5.7e-219 764.2 469 85.3
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 9.8e-219 763.5 469 84.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.2e-218 762.3 469 84.6
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 83.8
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.1e-217 758.1 469 83.6
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 83.6
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.3e-215 753.1 497 80.1
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.3e-215 753.1 449 88.2
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.3e-215 752.3 469 83.2
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 2.9e-215 751.9 469 82.5
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-214 749.6 470 83.4
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.5e-214 749.6 470 83.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.3e-214 748.4 545 75.4
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 8.0e-213 743.8 471 83.0
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.0e-212 743.4 469 81.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 6.8e-212 740.7 493 79.5
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 9.8e-211 736.9 469 83.4
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.9e-210 734.6 469 82.3
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 8.3e-210 733.8 470 82.8
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.4e-204 716.5 441 85.3
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.8e-204 716.1 491 78.4
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.8e-204 716.1 470 81.5
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.2e-203 713.4 492 77.8
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.1e-200 702.6 418 87.8
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.1e-200 702.6 418 87.8
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 7.3e-198 694.1 418 87.3
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.9e-194 682.2 470 79.4
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 6.4e-194 681.0 397 89.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.1e-191 671.4 418 85.6
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 2.4e-188 662.5 461 77.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.9e-185 652.9 469 77.0
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.9e-185 652.9 469 70.8
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.4e-185 652.5 383 89.3
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 7.1e-185 651.0 423 81.6
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.4e-180 636.7 374 89.0
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.6e-176 623.2 365 91.5
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 4.6e-168 595.1 340 92.9
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.6e-165 586.6 373 82.3
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 4.8e-165 585.1 465 65.2
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 5.3e-164 581.6 350 86.3
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.0e-163 579.7 469 69.1
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 4.2e-161 572.0 470 61.1
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 5.3e-156 555.1 324 91.4
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 5.0e-138 495.4 312 80.1
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.5e-134 483.8 308 85.1
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.2e-129 466.1 324 78.4
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 6.1e-128 461.8 365 69.3
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.7e-112 409.8 246 88.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 6.8e-87 325.5 312 62.2
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 4.6e-83 312.8 238 72.7
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.7e-82 310.8 182 82.4
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 9.5e-81 305.1 173 86.1
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.1e-79 301.6 301 56.8
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 3.4e-78 296.6 505 37.4
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.9e-71 271.9 294 54.8
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.7e-69 267.7 210 59.5
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 2.2e-69 267.3 160 89.4
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 5.4e-60 236.1 139 91.4
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.0e-58 230.3 407 40.5
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 9.6e-57 225.3 195 67.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 9.9e-54 215.3 119 95.0
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.8e-48 197.2 328 38.7
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 3.4e-46 190.3 501 30.1
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.2e-45 187.6 111 88.3
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.3e-42 177.6 107 80.4
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 1.9e-41 174.5 115 82.6
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.1e-40 171.0 105 79.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.0e-38 164.5 91 92.3
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.1e-31 140.2 83 84.3
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.1e-27 127.9 74 85.1
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.4e-26 125.2 72 83.3
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 3.0e-26 124.0 81 81.5
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 6.7e-26 122.9 72 81.9
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 8.8e-26 122.5 72 81.9
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.3e-25 120.6 74 79.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.2e-24 117.9 99 67.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-23 114.8 71 78.9
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.2e-20 103.6 57 86.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 7.9e-19 99.4 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 8.2e-16 89.4 52 88.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.0e-14 84.7 57 78.9
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.9e-14 83.2 52 88.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.2e-13 81.3 46 95.7
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 2.9e-13 80.9 44 93.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.6e-11 75.1 74 58.1
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 4.5e-06 57.0 33 87.9


User provided reference genes

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