Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 1.3e-39 166.0 88 100.0
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 1.0e-15 86.7 86 55.8
Potri.014G153900 Populus trichocarpa HOM05D009550 ORTHO05D006691 2.2e-15 85.5 88 59.1
Actinidia09718 Actinidia chinensis HOM05D007037 ORTHO05D006691 1.9e-14 82.4 86 54.7
Glyma.06G306500 Glycine max HOM05D009550 ORTHO05D006691 3.2e-14 81.6 88 55.7
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 2.1e-13 79.0 80 56.2
Medtr4g048500 Medicago truncatula HOM05D009550 ORTHO05D015141 1.4e-12 76.3 99 47.5
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.8e-12 75.9 86 53.5
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 3.9e-12 74.7 90 48.9
CiPaw.03G159600 Carya illinoinensis HOM05D007037 ORTHO05D006691 5.1e-12 74.3 89 55.1
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 5.1e-12 74.3 87 50.6
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.1e-11 73.2 87 49.4
Aqoxy4G01827 Aquilegia oxysepala HOM05D009550 ORTHO05D006691 1.5e-11 72.8 88 48.9
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.5e-11 72.8 84 50.0
TPR.G4603 Trifolium pratense HOM05D009550 ORTHO05D015141 1.5e-11 72.8 99 47.5
Psat4g099240 Pisum sativum HOM05D013666 ORTHO05D015141 2.0e-11 72.4 95 49.5
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 3.3e-11 71.6 84 51.2
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 3.3e-11 71.6 82 47.6
Glyma.12G098300 Glycine max HOM05D009550 ORTHO05D015141 4.3e-11 71.2 88 51.1
Cc05_g04380 Coffea canephora HOM05D007037 ORTHO05D006691 7.4e-11 70.5 86 51.2
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 9.7e-11 70.1 84 47.6
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 2.2e-10 68.9 86 47.7
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 2.2e-10 68.9 86 45.3
DCAR_019271 Daucus carota HOM05D007037 ORTHO05D006691 2.8e-10 68.6 80 50.0
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 2.8e-10 68.6 84 50.0
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 2.8e-10 68.6 84 47.6
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 3.7e-10 68.2 86 47.7
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 3.7e-10 68.2 84 47.6
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 4.8e-10 67.8 86 46.5
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 6.3e-10 67.4 83 48.2
ECA236G1425 Erigeron canadensis HOM05D007037 ORTHO05D006691 6.3e-10 67.4 80 50.0
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 6.3e-10 67.4 84 50.0
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 8.2e-10 67.0 86 45.3
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 8.2e-10 67.0 86 50.0
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 8.2e-10 67.0 86 50.0
Phvul.011G103100 Phaseolus vulgaris HOM05D009550 ORTHO05D006691 8.2e-10 67.0 99 48.5
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 1.4e-09 66.2 86 45.3
CSS0005463 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.8e-09 65.9 94 47.9
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 1.8e-09 65.9 86 46.5
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.4e-09 65.5 84 47.6
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 2.4e-09 65.5 86 46.5
Sabra14G0116400 Salix brachista HOM05D009550 ORTHO05D006691 3.1e-09 65.1 88 48.9
Ciclev10017336m.g Citrus clementina HOM05D009550 ORTHO05D006691 4.1e-09 64.7 88 47.7
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 4.1e-09 64.7 88 42.0
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 5.3e-09 64.3 86 43.0
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 9.1e-09 63.5 86 44.2
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.2e-08 63.2 85 44.7
Lalb_Chr03g0028711 Lupinus albus HOM05D009550 ORTHO05D015141 1.5e-08 62.8 98 46.9
Phvul.011G103200 Phaseolus vulgaris HOM05D009550 ORTHO05D006691 3.4e-08 61.6 95 46.3
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 3.4e-08 61.6 88 40.9
ClCG02G008820 Citrullus lanatus HOM05D009550 ORTHO05D006691 4.5e-08 61.2 88 42.0
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 4.5e-08 61.2 86 41.9
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 5.9e-08 60.8 86 41.9
Lj8E125T3 Lonicera japonica HOM05D009550 ORTHO05D006691 5.9e-08 60.8 68 54.4
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 5.9e-08 60.8 86 44.2
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 5.9e-08 60.8 84 45.2
Rhsim04G0053000 Rhododendron simsii HOM05D007037 ORTHO05D006691 1.0e-07 60.1 82 51.2
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 2.2e-07 58.9 87 41.4
Lj3g0028110 Lotus japonicus HOM05D009550 ORTHO05D006691 2.2e-07 58.9 96 41.7
QL01p007120 Quercus lobata HOM05D009550 ORTHO05D006691 2.2e-07 58.9 87 41.4
Zm00001eb048920 Zea mays HOM05D007037 ORTHO05D006691 2.2e-07 58.9 82 42.7
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 2.9e-07 58.5 84 42.9
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.9e-07 58.5 86 41.9
Os03g0574600 Oryza sativa ssp. japonica HOM05D007037 ORTHO05D006691 3.8e-07 58.2 90 45.6
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 5.0e-07 57.8 86 44.2
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 5.0e-07 57.8 88 40.9
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 6.5e-07 57.4 81 44.4
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 8.5e-07 57.0 86 40.7
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 1.1e-06 56.6 84 39.3
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 1.4e-06 56.2 84 41.7
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 1.9e-06 55.8 86 40.7
MELO3C019272.2 Cucumis melo HOM05D009550 ORTHO05D006691 5.5e-06 54.3 89 41.6
CsaV3_2G034900 Cucumis sativus L. HOM05D009550 ORTHO05D006691 5.5e-06 54.3 89 41.6
Cfa014392 Carpinus fangiana HOM05D009550 ORTHO05D006691 7.2e-06 53.9 84 42.9
Nn1g07147 Nelumbo nucifera HOM05D009550 ORTHO05D006691 7.2e-06 53.9 86 39.5
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 9.4e-06 53.5 75 49.3


User provided reference genes

Program Settings