Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 5.2e-204 714.5 466 100.0
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 3.7e-125 452.6 460 63.9
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 7.7e-107 391.7 451 66.5
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 5.5e-105 385.6 454 66.5
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.4e-103 380.9 470 67.0
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 1.1e-100 371.3 466 50.0
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 4.2e-89 332.8 454 60.1
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 4.0e-87 326.2 454 59.5
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 5.7e-86 322.4 452 52.7
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.9e-81 307.4 452 52.0
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 4.3e-81 306.2 452 58.4
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 4.3e-81 306.2 459 53.6
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.0e-79 300.1 450 57.3
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.0e-78 297.4 453 57.8
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.7e-75 287.0 452 45.8
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.1e-73 281.6 453 56.3
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.1e-72 277.3 451 48.8
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 1.9e-68 264.2 355 66.5
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 2.3e-66 257.3 449 46.8
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.1e-65 255.0 345 52.8
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 3.6e-64 250.0 449 53.9
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 6.2e-64 249.2 448 53.6
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.7e-61 241.1 468 51.5
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 5.4e-60 236.1 449 46.3
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 9.2e-60 235.3 437 53.1
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 1.2e-59 235.0 460 45.9
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 6.0e-59 232.6 445 53.3
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.7e-58 231.1 458 51.1
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 3.9e-58 229.9 457 51.6
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 2.5e-57 227.3 460 46.3
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 9.5e-57 225.3 460 46.1
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.2e-56 224.9 463 51.4
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 2.8e-56 223.8 449 45.7
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.1e-55 221.9 460 45.9
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 8.9e-55 218.8 449 51.4
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 9.9e-54 215.3 431 40.4
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.7e-53 214.5 451 45.9
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 8.4e-53 212.2 456 51.1
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.4e-52 210.7 437 50.8
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 7.1e-52 209.1 443 33.9
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 3.9e-50 203.4 458 49.6
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 3.9e-50 203.4 431 52.4
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 5.1e-50 203.0 453 50.1
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 5.1e-50 203.0 339 46.6
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 6.6e-50 202.6 462 49.8
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 6.6e-50 202.6 453 47.2
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 1.1e-49 201.8 452 38.7
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.6e-48 198.0 464 42.9
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.6e-48 198.0 463 47.9
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.4e-47 194.9 463 48.6
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 5.2e-47 193.0 464 48.5
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 8.9e-47 192.2 464 48.5
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 8.9e-47 192.2 449 49.7
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 4.4e-46 189.9 461 48.4
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 7.6e-46 189.1 456 36.2
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.7e-45 188.0 459 48.6
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 4.9e-45 186.4 456 37.5
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 8.4e-45 185.7 460 47.8
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 8.4e-45 185.7 450 49.3
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 1.4e-44 184.9 451 42.8
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.2e-43 181.8 475 46.7
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 1.6e-43 181.4 460 47.2
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 2.1e-43 181.0 460 47.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 2.1e-43 181.0 460 47.4
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 7.8e-43 179.1 460 48.3
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 8.7e-42 175.6 457 47.0
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.9e-41 174.5 345 42.6
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.5e-41 174.1 458 47.4
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 3.3e-41 173.7 457 46.8
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 4.8e-40 169.9 341 42.2
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 3.1e-39 167.2 211 44.1
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 4.0e-39 166.8 456 47.1
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 3.8e-37 160.2 417 51.1
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 6.4e-37 159.5 448 47.1
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.2e-36 157.1 209 45.0
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.9e-33 147.9 449 44.1
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 2.4e-31 141.0 107 72.9
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 6.4e-29 132.9 175 43.4
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 2.3e-26 124.4 253 35.2
CBR_g50708 Chara braunii HOM05D007725 ORTHO05D009774 3.4e-14 84.0 283 25.4
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.7e-13 81.6 98 44.9
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.1e-12 79.0 68 55.9
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.8e-10 71.6 207 28.0
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 8.7e-10 69.3 108 33.3
Thecc.07G020700 Theobroma cacao HOM05D007725 ORTHO05D009774 1.9e-09 68.2 100 40.0
Thecc.07G021000 Theobroma cacao HOM05D007725 ORTHO05D009774 5.7e-09 66.6 73 46.6
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 6.3e-08 63.2 112 38.4


User provided reference genes

Program Settings