Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.1e-205 718.8 360 100.0
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 9.4e-153 543.9 369 79.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.9e-145 519.6 369 76.4
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.8e-140 503.1 361 73.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.3e-127 459.5 373 67.8
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.5e-123 445.3 374 66.8
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 6.3e-117 424.9 372 64.8
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 8.3e-117 424.5 392 61.5
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 5.0e-114 415.2 371 64.7
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.5e-113 413.7 403 61.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 8.0e-112 407.9 369 63.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 8.3e-109 397.9 382 62.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 3.0e-90 336.3 375 54.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.3e-89 332.4 375 54.1
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 2.9e-85 319.7 373 53.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 3.5e-83 312.8 410 47.3
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 5.1e-82 308.9 374 51.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.5e-81 306.6 380 48.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 3.3e-81 306.2 371 51.8
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.3e-81 305.8 376 51.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 5.6e-81 305.4 413 46.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 9.6e-81 304.7 379 48.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.1e-80 303.5 414 47.1
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 4.7e-80 302.4 358 54.2
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 4.7e-80 302.4 377 48.3
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 6.8e-79 298.5 380 48.2
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.8e-79 298.5 385 50.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.2e-78 297.7 375 47.5
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.6e-78 296.6 373 50.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 9.9e-78 294.7 374 48.1
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 6.4e-77 292.0 374 47.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 8.4e-77 291.6 376 48.1
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.1e-76 291.2 377 50.1
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.5e-75 286.2 416 44.2
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.6e-75 285.8 399 47.9
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.3e-74 284.3 386 47.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.7e-74 283.9 385 48.6
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.9e-74 282.7 423 43.5
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.6e-73 278.9 377 47.2
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 9.6e-73 278.1 378 44.7
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.8e-72 276.6 372 47.6
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 6.2e-72 275.4 377 48.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-71 274.2 411 44.5
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-71 273.9 418 42.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.1e-71 273.1 393 48.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-71 272.7 415 42.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 6.9e-71 271.9 377 46.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.0e-70 270.4 412 44.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.6e-70 268.5 420 42.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 9.9e-70 268.1 388 47.9
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.9e-69 266.5 380 46.6
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.9e-69 265.8 406 43.1
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 6.4e-69 265.4 383 43.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 6.4e-69 265.4 383 43.1
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.4e-69 265.0 389 47.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.4e-68 263.5 336 50.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.1e-68 261.9 385 46.5
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.7e-67 260.0 390 47.4
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.3e-66 256.9 413 44.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 5.1e-66 255.8 382 41.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.5e-65 253.4 367 46.3
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.3e-65 251.9 389 46.5
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 7.6e-62 241.9 362 44.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.3e-61 241.1 384 42.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.7e-61 240.7 372 43.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.2e-61 240.4 331 47.7
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.4e-61 238.4 363 47.9
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.5e-60 235.7 332 45.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.5e-59 233.0 401 38.4
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.8e-58 230.7 395 40.0
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.1e-58 229.2 373 40.8
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 5.1e-58 229.2 387 41.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 5.1e-58 229.2 391 39.9
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-57 228.0 375 40.5
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.9e-57 227.3 387 41.6
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.9e-57 227.3 400 42.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.9e-57 227.3 377 44.3
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.3e-57 226.1 396 40.2
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 5.6e-57 225.7 362 40.6
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.3e-56 224.6 390 39.0
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.6e-56 224.2 422 40.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.8e-56 223.4 427 41.2
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.4e-55 221.1 391 40.9
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 3.1e-55 219.9 398 40.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.2e-54 218.0 406 39.4
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.4e-52 211.1 399 38.3
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.5e-52 210.3 399 37.8
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.5e-52 209.1 363 39.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 7.1e-52 208.8 393 37.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 7.1e-52 208.8 393 37.7
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.1e-51 207.2 400 37.8
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.5e-51 206.5 363 39.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 6.0e-51 205.7 385 39.0
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 6.0e-51 205.7 393 37.7
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 7.9e-51 205.3 400 36.8
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.3e-50 204.5 393 37.4
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.3e-50 204.5 393 37.2
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 3.9e-50 203.0 393 36.9
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.9e-50 203.0 250 50.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 5.1e-50 202.6 398 37.4
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 5.1e-50 202.6 392 37.2
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 3.3e-49 199.9 264 51.9
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.6e-48 197.6 250 49.2
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-48 197.6 364 39.3
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.1e-48 197.2 324 42.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 3.8e-45 186.4 381 37.3
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 5.0e-45 186.0 407 36.4
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.9e-44 184.1 289 43.6
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.7e-43 180.3 408 35.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.0e-42 176.8 321 39.3
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.7e-42 175.6 408 35.3
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.6e-40 171.0 409 35.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.8e-40 170.2 380 33.9
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.0e-37 161.8 408 34.6
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.9e-36 157.5 408 33.3
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.2e-36 156.8 407 33.7
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.3e-32 144.8 210 43.8
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.2e-32 144.1 228 48.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 4.8e-32 142.9 234 41.9
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 8.2e-32 142.1 226 41.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.1e-31 141.7 259 39.8
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.1e-31 141.7 256 40.6
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 4.1e-31 139.8 275 38.9
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.9e-31 139.0 258 36.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.6e-30 137.1 267 40.4
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.6e-30 137.1 258 40.7
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 4.5e-30 136.3 218 41.3
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.0e-29 135.2 256 40.2
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.9e-29 133.7 339 35.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 3.8e-29 133.3 389 30.6
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.0e-29 132.9 261 37.9
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.4e-28 131.3 365 32.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.9e-28 131.0 256 40.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 3.2e-28 130.2 410 30.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.5e-28 129.4 254 36.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.1e-27 127.5 232 38.8
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 3.6e-27 126.7 198 41.4
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 4.7e-27 126.3 240 37.5
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.9e-27 125.6 239 36.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.4e-26 124.8 223 37.2
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.3e-26 124.0 371 28.8
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 3.9e-26 123.2 252 36.1
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.5e-25 121.3 325 32.9
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-25 120.9 249 35.3
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.6e-25 120.6 271 36.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 4.4e-25 119.8 398 29.6
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 5.7e-25 119.4 211 37.4
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.3e-24 118.2 283 35.3
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.7e-24 117.9 240 36.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 3.1e-23 113.6 260 33.1
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.0e-23 112.5 259 34.7
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 7.0e-23 112.5 270 34.1
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.2e-22 111.7 189 39.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.9e-20 104.4 201 35.3
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.9e-20 104.4 259 31.3
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.5e-20 104.0 238 34.0
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.1e-19 99.4 141 44.7
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 3.3e-17 93.6 53 79.2
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.8e-16 89.7 138 38.4
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.1e-15 88.6 93 48.4
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.8e-15 87.8 221 36.2
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.8e-15 87.8 127 44.9
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.6e-14 84.7 191 32.5
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.5e-14 83.2 176 33.5
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 4.5e-14 83.2 176 33.5
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.0e-13 82.0 143 41.3
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.2e-12 75.9 131 39.7
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 2.4e-07 60.8 170 30.0
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 2.4e-07 60.8 81 48.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 7.0e-07 59.3 52 55.8
Phvul.005G018900 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.1e-07 58.9 51 56.9


User provided reference genes

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