Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.7e-120 436.0 229 100.0
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.4e-98 363.2 230 85.2
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.6e-97 359.8 229 82.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.7e-97 359.0 213 84.5
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 6.0e-97 357.8 232 84.1
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 7.9e-97 357.5 230 84.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.3e-96 355.9 212 84.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 8.2e-94 347.4 204 83.8
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.2e-94 347.4 235 82.6
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 3.0e-88 328.9 211 75.8
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 7.4e-87 324.3 229 70.7
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 9.7e-87 323.9 236 75.8
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.2e-86 322.8 214 77.1
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.7e-86 322.0 211 76.3
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.7e-86 322.0 230 70.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 4.8e-86 321.6 216 73.6
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 6.3e-86 321.2 213 75.1
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.4e-85 320.1 211 76.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.8e-85 319.7 225 76.4
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-85 319.7 232 69.8
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.4e-85 319.3 226 71.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 4.1e-85 318.5 210 75.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.5e-84 316.6 212 75.5
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.6e-84 315.8 213 73.2
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 5.9e-84 314.7 211 75.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.9e-84 314.7 211 74.9
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 7.7e-84 314.3 212 75.5
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.3e-83 313.5 206 76.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.3e-83 313.5 211 74.9
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 2.9e-83 312.4 212 72.6
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 3.8e-83 312.0 213 76.1
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.8e-83 312.0 211 73.9
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 8.5e-83 310.8 211 73.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-82 310.5 211 73.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-82 310.5 211 73.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-82 310.5 214 74.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-82 310.5 211 73.5
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.5e-82 309.3 214 74.8
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.5e-82 309.3 212 72.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 5.5e-82 308.1 215 73.5
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 9.4e-82 307.4 211 73.0
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.6e-81 306.6 211 72.5
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.1e-81 306.2 214 73.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.6e-81 305.4 229 73.4
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.6e-81 305.4 211 72.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 4.7e-81 305.1 214 70.6
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.9e-81 304.3 215 72.1
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.0e-80 302.4 211 73.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 8.8e-80 300.8 211 72.0
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.0e-79 299.7 232 70.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.0e-79 299.7 211 70.6
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.6e-79 299.3 232 70.7
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.6e-79 299.3 223 70.4
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.4e-79 298.5 212 70.8
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.4e-79 298.5 212 70.8
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.7e-79 298.1 230 67.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.7e-79 298.1 230 67.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 7.4e-79 297.7 237 70.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.3e-78 297.0 230 67.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.3e-78 297.0 230 67.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.7e-78 296.6 232 70.3
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.3e-78 294.7 230 67.0
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 6.3e-78 294.7 235 66.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 8.2e-78 294.3 219 69.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-77 293.9 230 69.1
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-77 293.9 230 69.1
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.1e-77 293.9 209 70.8
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 7.0e-77 291.2 211 71.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 7.0e-77 291.2 211 71.1
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.2e-76 290.4 211 68.2
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.6e-76 289.3 213 69.5
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.6e-76 289.3 224 68.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.2e-74 282.3 215 65.6
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 5.5e-74 281.6 216 66.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 9.4e-74 280.8 209 67.5
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.1e-73 279.6 208 69.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 4.7e-73 278.5 205 67.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.7e-73 278.5 211 64.9
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.4e-72 276.9 215 65.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.4e-72 276.9 198 69.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.3e-72 276.2 202 70.8
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 6.7e-72 274.6 237 62.4
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.5e-71 273.5 203 65.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 4.4e-71 271.9 208 64.4
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 7.4e-71 271.2 203 66.5
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.7e-70 268.9 206 64.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 4.8e-70 268.5 201 67.2
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 6.3e-70 268.1 204 64.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 6.3e-70 268.1 219 69.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.4e-69 266.2 192 67.7
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.4e-69 266.2 219 68.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 5.3e-69 265.0 210 64.3
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.0e-68 263.1 206 64.6
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.6e-68 262.7 208 66.3
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 7.7e-68 261.2 210 65.7
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.0e-67 260.8 208 65.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.3e-67 260.4 210 65.7
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-67 260.0 210 65.2
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.7e-67 260.0 210 65.2
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.7e-67 260.0 210 65.2
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.7e-67 260.0 210 65.7
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.2e-67 259.6 205 64.4
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.2e-67 259.6 205 64.4
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.9e-67 259.2 210 64.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-67 259.2 210 64.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.8e-67 258.8 210 64.8
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 6.5e-67 258.1 210 66.2
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 8.5e-67 257.7 210 64.8
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-66 257.3 210 64.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.1e-66 257.3 210 64.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.5e-66 256.9 220 61.8
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 7.2e-66 254.6 207 66.7
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.6e-65 252.3 202 64.4
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-64 250.4 211 62.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.3e-64 249.6 191 63.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.2e-64 248.4 208 62.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 6.8e-64 248.1 207 60.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 8.8e-64 247.7 207 60.9
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.4e-63 245.7 200 65.5
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.8e-62 241.9 198 61.1
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 6.3e-62 241.5 192 60.9
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.8e-61 240.0 198 58.6
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-59 233.4 203 60.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 9.4e-58 227.6 213 60.1
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.2e-54 216.5 144 71.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 6.3e-54 214.9 217 56.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 8.3e-54 214.5 168 66.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.4e-53 213.0 178 63.5
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.8e-51 205.7 182 57.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 6.1e-49 198.4 201 49.8
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 4.9e-46 188.7 203 52.2
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.0e-45 184.9 121 75.2
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 4.7e-41 172.2 127 66.9
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.1e-41 171.8 205 48.8
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.6e-36 157.1 122 59.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.9e-34 150.2 103 66.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.0e-32 142.5 103 66.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.0e-32 142.5 104 66.3
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 3.3e-18 96.3 62 72.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.4e-16 90.9 62 74.2
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 9.9e-07 58.2 74 36.5
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 9.9e-07 58.2 74 36.5
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 8.4e-06 55.1 96 34.4


User provided reference genes

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