Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.7e-67 259.2 135 100.0
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.0e-47 192.6 129 78.3
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 4.6e-36 154.8 129 64.3
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 9.6e-34 147.1 136 61.8
Ca_11944_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 8.7e-27 124.0 91 74.7
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 1.9e-26 122.9 134 53.0
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 5.6e-26 121.3 132 53.8
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.3e-25 120.2 132 53.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 1.6e-25 119.8 134 53.7
Ca_27140_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.3e-18 95.1 82 67.1
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 7.4e-18 94.4 156 44.9
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 3.1e-16 89.0 148 43.9
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 3.1e-16 89.0 148 43.9
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.5e-15 86.7 118 45.8
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 2.9e-14 82.4 138 41.3
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 6.4e-14 81.3 134 42.5
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.4e-14 81.3 132 40.2
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.4e-13 80.1 132 37.1
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.1e-13 77.8 135 40.0
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.1e-13 77.8 135 40.0
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 4.6e-12 75.1 132 36.4
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.8e-11 73.2 139 39.6
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 3.0e-11 72.4 135 41.5
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 3.0e-11 72.4 132 36.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 3.9e-11 72.0 135 40.7
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 6.7e-11 71.2 134 38.8
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 8.7e-11 70.9 139 39.6
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.5e-10 70.1 138 41.3
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.9e-10 69.7 136 38.2
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 2.5e-10 69.3 135 40.7
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 3.3e-10 68.9 140 39.3
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 5.6e-10 68.2 146 37.7
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 9.6e-10 67.4 148 38.5
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 9.6e-10 67.4 141 38.3
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.6e-09 66.6 132 41.7
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 2.1e-09 66.2 139 38.1
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 2.1e-09 66.2 139 37.4
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 3.7e-09 65.5 148 33.8
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 3.7e-09 65.5 143 38.5
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.7e-09 65.5 140 35.7
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 4.8e-09 65.1 149 33.6
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 6.2e-09 64.7 141 39.0
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 8.2e-09 64.3 152 33.6
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.1e-08 63.9 134 38.1
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.1e-08 63.9 132 37.9
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.4e-08 63.5 138 37.7
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.8e-08 63.2 146 39.7
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 2.4e-08 62.8 139 33.8
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.4e-08 62.8 152 36.2
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.1e-08 62.4 136 35.3
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 3.1e-08 62.4 136 35.3
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 1.2e-07 60.5 139 37.4
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.5e-07 60.1 144 34.0
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.5e-07 60.1 139 40.3
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.0e-07 59.7 134 36.6
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.0e-07 59.7 134 35.8
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 3.4e-07 58.9 132 34.8
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 3.4e-07 58.9 132 34.8
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 3.4e-07 58.9 152 32.9
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 4.5e-07 58.5 134 35.8
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 4.5e-07 58.5 125 37.6
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 4.5e-07 58.5 135 38.5
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.8e-07 58.2 134 35.8
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.0e-06 57.4 150 36.0
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.0e-06 57.4 136 36.8
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.3e-06 57.0 132 37.9
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.3e-06 57.0 153 35.9
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.7e-06 56.6 132 31.8
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.2e-06 56.2 142 37.3
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.2e-06 56.2 132 31.1
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 2.9e-06 55.8 145 31.7
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.9e-06 55.8 132 31.8
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 3.8e-06 55.5 132 33.3
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 3.8e-06 55.5 138 29.7
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 4.9e-06 55.1 138 34.8
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 6.5e-06 54.7 134 35.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.5e-06 54.7 132 31.1
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 8.4e-06 54.3 166 30.7


User provided reference genes

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