Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.3e-205 719.9 500 100.0
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 2.4e-170 602.8 500 87.2
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 6.1e-110 402.1 503 70.4
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 2.4e-106 390.2 502 62.2
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 2.9e-96 356.7 501 53.7
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 3.5e-81 306.6 515 58.1
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 1.0e-72 278.5 502 60.4
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 1.5e-68 264.6 517 50.9
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 9.2e-66 255.4 521 54.9
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 4.7e-62 243.0 508 47.4
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 1.2e-60 238.4 507 52.7
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 7.1e-58 229.2 461 54.7
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.2e-57 228.4 468 53.2
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 4.3e-55 219.9 508 54.7
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 6.9e-53 212.6 294 42.2
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 9.0e-45 185.7 473 50.5
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 9.9e-44 182.2 506 50.0
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.3e-43 181.8 513 50.5
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.6e-41 173.3 453 50.8
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 2.5e-39 167.5 222 41.4
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 2.8e-38 164.1 223 39.9
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 2.8e-38 164.1 358 58.4
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.4e-37 161.8 504 49.6
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.0e-36 157.9 433 52.9
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.2e-33 148.7 290 33.8
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 2.1e-33 147.9 500 28.4
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 2.7e-33 147.5 424 52.4
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 8.7e-32 142.5 454 50.2
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.5e-28 131.7 269 32.7
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.0e-28 131.3 454 49.8
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 2.9e-27 127.5 229 30.6
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 2.9e-27 127.5 215 37.7
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 1.1e-26 125.6 502 46.4
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.4e-26 125.2 505 43.4
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 1.9e-26 124.8 221 31.7
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 9.3e-26 122.5 229 31.4
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 9.3e-26 122.5 229 31.4
Medtr4g007150 Medicago truncatula HOM05D067157 ORTHO05D009397 2.1e-25 121.3 102 61.8
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 4.6e-25 120.2 502 47.4
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 7.9e-25 119.4 445 47.0
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 7.9e-25 119.4 206 34.0
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 7.9e-25 119.4 225 29.8
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 7.9e-25 119.4 225 29.8
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 2.3e-24 117.9 221 28.5
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 2.3e-24 117.9 510 45.1
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 3.0e-24 117.5 418 50.0
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 3.9e-24 117.1 504 38.7
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 5.1e-24 116.7 506 45.3
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.1e-23 115.5 291 60.8
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 1.1e-23 115.5 508 38.4
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 2.8e-22 110.9 507 45.6
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 6.9e-21 106.3 506 42.3
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 3.4e-20 104.0 507 43.4
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 5.9e-20 103.2 472 45.8
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.0e-19 102.4 504 44.2
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.7e-19 101.7 289 63.0
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 2.2e-19 101.3 507 42.8
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 2.2e-19 101.3 300 61.3
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 2.9e-19 100.9 507 44.4
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 5.0e-19 100.1 312 51.9
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 8.5e-19 99.4 289 61.9
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.1e-18 99.0 509 42.8
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 2.5e-18 97.8 507 42.2
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 3.2e-18 97.4 289 45.7
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 1.6e-17 95.1 504 41.7
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.6e-17 95.1 329 58.7
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.1e-17 94.7 293 58.0
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.0e-16 90.9 429 45.7
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 5.7e-15 86.7 289 65.1
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 7.4e-15 86.3 305 28.9
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 7.4e-15 86.3 291 64.3
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 2.2e-14 84.7 134 38.1
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 6.3e-14 83.2 293 26.6
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 1.4e-13 82.0 82 51.2
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 2.4e-13 81.3 236 26.7
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.5e-12 78.6 287 63.8
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 5.9e-12 76.6 502 41.4
Sc06g0002690 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.7e-11 75.1 142 28.2
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 2.2e-11 74.7 82 46.3
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 3.2e-10 70.9 86 43.0
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 5.5e-10 70.1 81 44.4
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 7.2e-10 69.7 424 34.0
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 7.2e-10 69.7 75 41.3
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 3.6e-09 67.4 81 40.7
Ah.02g114350 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.4e-08 65.5 196 25.0
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 1.4e-08 65.5 75 41.3
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.8e-08 65.1 118 33.1
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 3.9e-08 63.9 203 23.2
DCAR_016048 Daucus carota HOM05D000001 ORTHO05D009952 5.1e-08 63.5 264 22.0
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 8.8e-08 62.8 71 43.7
PGR083G2601 Punica granatum HOM05D000001 ORTHO05D000003 8.8e-08 62.8 145 27.6
Hma1.2p1_0727F.1_g209180 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.1e-07 62.4 192 25.5
PGR044G1491 Punica granatum HOM05D000001 ORTHO05D000003 1.5e-07 62.0 197 24.9
Nn8g40494 Nelumbo nucifera HOM05D007251 ORTHO05D009266 2.0e-07 61.6 180 30.0
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 2.6e-07 61.2 176 26.1
Psat1g022040 Pisum sativum HOM05D000001 ORTHO05D000003 2.6e-07 61.2 194 23.7
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 3.3e-07 60.8 232 28.4
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 4.4e-07 60.5 202 21.8
Gorai.009G294200 Gossypium raimondii HOM05D000001 ORTHO05D000003 4.4e-07 60.5 160 25.0
Lalb_Chr10g0091791 Lupinus albus HOM05D000001 ORTHO05D000003 4.4e-07 60.5 141 29.8
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 5.7e-07 60.1 212 21.7
AagrBONN_evm.TU.Sc2ySwM_117.2595 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.7e-07 60.1 158 25.3
BcaC02g11506 Brassica carinata HOM05D000001 ORTHO05D000003 5.7e-07 60.1 150 26.0
C04p14590 Brassica napus HOM05D000001 ORTHO05D000003 5.7e-07 60.1 150 26.0
Gohir.D05G280800 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.7e-07 60.1 160 25.0
Medtr7g006590 Medicago truncatula HOM05D064118 ORTHO05D009397 5.7e-07 60.1 100 40.0
Pp3c4_16600 Physcomitrium patens HOM05D000001 ORTHO05D000003 5.7e-07 60.1 149 22.8
GSVIVG01026150001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.7e-07 60.1 149 26.2
Psat5g115800 Pisum sativum HOM05D000001 ORTHO05D009144 7.4e-07 59.7 245 23.3
SMO171G0093 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 9.7e-07 59.3 173 26.0
THA.LOC104821376 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 9.7e-07 59.3 215 29.3
VMungo1309G1978 Vigna mungo HOM05D000001 ORTHO05D007291 9.7e-07 59.3 147 27.2
BraA05t20073Z Brassica rapa HOM05D000001 ORTHO05D000003 1.3e-06 58.9 167 25.1
SMO353G0104 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.3e-06 58.9 173 26.0
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.7e-06 58.5 175 20.0
A04p26340 Brassica napus HOM05D001895 ORTHO05D002082 1.7e-06 58.5 150 26.7
A05p11260 Brassica napus HOM05D000001 ORTHO05D000003 1.7e-06 58.5 167 24.6
C04p63740 Brassica napus HOM05D001895 ORTHO05D002082 1.7e-06 58.5 150 26.7
BolC4t23042H Brassica oleracea HOM05D000001 ORTHO05D000003 1.7e-06 58.5 150 26.0
BraA04t18137Z Brassica rapa HOM05D000001 ORTHO05D000003 1.7e-06 58.5 150 26.7
THA.LOC104815925 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.7e-06 58.5 161 30.4
AagrBONN_evm.TU.Sc2ySwM_228.877 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 58.2 176 24.4
EL10Ac6g13335 Beta vulgaris HOM05D000001 ORTHO05D010781 2.2e-06 58.2 150 28.7
Nitab4.5_0004679g0050 Nicotiana tabacum HOM05D007291 ORTHO05D009038 2.2e-06 58.2 187 21.4
Phvul.002G035600 Phaseolus vulgaris HOM05D000001 ORTHO05D007291 2.2e-06 58.2 147 25.2
Potri.016G128900 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.2e-06 58.2 149 27.5
TWI79G0708 Tripterygium wilfordii HOM05D005622 ORTHO05D002854 2.2e-06 58.2 233 23.6
TAR623G0408 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.2e-06 58.2 187 25.7
CAN.G397.50 Capsicum annuum HOM05D000001 ORTHO05D000003 2.8e-06 57.8 150 30.0
DCAR_016174 Daucus carota HOM05D000001 ORTHO05D000003 2.8e-06 57.8 197 22.8
FAN21G1787 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-06 57.8 195 29.7
HanXRQChr04g0108241 Helianthus annuus HOM05D000001 ORTHO05D000003 2.8e-06 57.8 204 24.5
MD05G1126100 Malus domestica HOM05D000001 ORTHO05D000003 2.8e-06 57.8 153 27.5
SGA_v2.0_scaffold159G37611 Striga asiatica HOM05D007291 ORTHO05D009038 2.8e-06 57.8 176 21.6
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.7e-06 57.4 175 21.7
Lj1P934T18 Lonicera japonica HOM05D000001 ORTHO05D000003 3.7e-06 57.4 141 22.7
Medtr2g036960 Medicago truncatula HOM05D000001 ORTHO05D000003 4.8e-06 57.0 168 28.0
Nn7g36499 Nelumbo nucifera HOM05D000001 ORTHO05D015413 4.8e-06 57.0 207 23.7
TAR383G0386 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.8e-06 57.0 145 29.0
VMungo1383G0031 Vigna mungo HOM05D000001 ORTHO05D000003 4.8e-06 57.0 167 27.5
AT2G34400 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 6.3e-06 56.6 165 24.8
Carub.0003s1213 Capsella rubella HOM05D000001 ORTHO05D000003 6.3e-06 56.6 154 29.9
Cpa.g.sc117.37 Carica papaya HOM05D000001 ORTHO05D000003 6.3e-06 56.6 175 22.3
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 6.3e-06 56.6 224 21.0
Lsat_1_v5_gn_4_158400 Lactuca sativa HOM05D000001 ORTHO05D009773 6.3e-06 56.6 206 26.7
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 6.3e-06 56.6 233 22.7
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 6.3e-06 56.6 61 42.6
arahy.Tifrunner.gnm1.ann1.W3SGY7 Arachis hypogaea HOM05D000001 ORTHO05D009952 8.2e-06 56.2 141 28.4
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 8.2e-06 56.2 174 21.3
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-06 56.2 174 21.3
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-06 56.2 175 21.1
FAN18G2956 Fragaria x ananassa HOM05D002463 ORTHO05D002669 8.2e-06 56.2 199 25.6
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-06 56.2 175 21.1
Solyc04g054290.3 Solanum lycopersicum HOM05D000001 ORTHO05D009295 8.2e-06 56.2 143 24.5


User provided reference genes

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