Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1674.4 856 100.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1429.5 828 89.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 0.0e+00 1286.6 849 78.2
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 0.0e+00 1276.2 856 77.5
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 0.0e+00 1177.9 875 72.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1166.0 854 72.5
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1163.3 854 72.0
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 0.0e+00 1144.8 851 72.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1136.7 875 69.6
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 0.0e+00 1118.6 853 68.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1103.2 858 67.6
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1088.2 866 66.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 2.2e-293 1012.3 868 62.8
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.4e-247 859.4 858 54.9
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 6.1e-243 844.7 858 54.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.2e-238 830.5 833 53.9
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.5e-236 823.5 848 53.7
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.2e-232 809.7 862 52.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 5.0e-229 798.5 854 51.8
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 6.5e-229 798.1 853 51.9
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 4.0e-226 788.9 853 51.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.7e-224 783.5 879 51.2
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-224 783.1 881 50.9
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.8e-223 780.0 855 50.5
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.6e-222 776.9 880 49.7
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.0e-222 776.5 845 51.1
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.7e-222 776.2 843 51.6
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.5e-222 775.8 855 50.5
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.9e-222 775.0 845 51.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.7e-221 773.5 845 51.0
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.0e-221 771.9 855 49.6
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-220 770.0 854 51.8
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.5e-220 769.6 751 56.3
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.0e-218 762.3 867 50.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 5.2e-218 761.9 744 55.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-217 760.8 877 49.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 5.4e-215 751.9 934 47.9
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.5e-212 743.0 855 49.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 4.3e-212 742.3 888 49.3
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.3e-212 742.3 855 48.9
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 5.2e-210 735.3 862 49.0
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 8.9e-210 734.6 917 47.3
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.0e-209 733.4 864 48.5
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 5.8e-209 731.9 862 49.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-208 730.7 882 47.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.3e-208 730.7 858 48.4
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.4e-207 726.5 899 46.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.1e-207 725.7 853 50.2
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 7.0e-207 724.9 862 48.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.9e-205 719.2 862 48.3
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 3.3e-204 716.1 858 47.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.1e-203 713.4 814 48.9
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 3.4e-201 706.1 866 46.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.3e-200 704.1 887 45.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.9e-200 703.0 943 45.5
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 9.2e-199 698.0 889 45.1
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.1e-198 696.8 861 45.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.0e-197 693.0 850 45.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 9.5e-196 688.0 785 48.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-195 687.2 871 45.8
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 8.9e-194 681.4 854 45.0
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.1e-191 674.5 697 52.1
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 9.2e-191 671.4 855 43.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 9.2e-191 671.4 855 46.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 6.0e-190 668.7 858 45.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.8e-184 649.4 875 42.7
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.8e-184 649.4 651 55.9
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.3e-183 644.8 337 98.8
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.0e-181 639.8 696 50.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 8.7e-181 638.3 703 51.2
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.6e-179 632.9 887 43.1
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.6e-179 632.9 922 41.9
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 8.1e-179 631.7 859 42.1
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.1e-178 631.3 881 42.8
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-178 630.9 866 42.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 4.0e-178 629.4 855 41.9
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.4e-177 626.3 750 47.7
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.3e-176 624.4 871 42.1
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.0e-173 614.8 868 42.5
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 5.1e-173 612.5 855 41.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-172 610.1 933 40.3
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 4.0e-170 602.8 859 43.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.4e-169 599.7 857 42.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.9e-168 596.7 864 41.9
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.9e-168 596.7 864 41.8
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.9e-168 595.9 864 41.6
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.1e-167 594.7 713 47.8
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 4.2e-167 592.8 864 41.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.1e-167 592.0 907 40.9
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 2.1e-166 590.5 864 41.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.0e-165 586.6 840 42.3
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 3.9e-165 586.3 855 40.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.7e-165 585.5 855 41.3
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 8.7e-165 585.1 861 40.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 5.3e-162 575.9 853 41.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.7e-160 570.9 698 46.3
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-159 568.2 851 41.0
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 7.1e-159 565.5 700 46.7
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-156 557.8 891 39.8
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 5.7e-156 555.8 808 42.1
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-148 531.2 663 45.9
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.1e-146 523.5 853 39.7
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.7e-144 517.7 700 43.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 4.4e-140 503.1 635 46.6
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-138 498.0 653 45.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.7e-132 476.1 791 41.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-123 448.0 889 34.6
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.7e-123 448.0 858 35.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 6.5e-120 436.0 758 38.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.6e-118 430.3 546 47.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-109 402.1 707 36.9
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 6.3e-107 392.9 614 40.2
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.8e-101 374.8 750 34.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 3.7e-99 367.1 766 35.0
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 2.7e-97 360.9 691 34.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-91 342.0 517 38.3
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.0e-84 318.2 255 65.9
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 7.5e-84 316.2 238 69.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.6e-78 298.5 194 79.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.7e-78 297.0 287 56.8
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.4e-77 295.4 530 36.4
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-76 292.0 586 34.5
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 9.9e-76 289.3 947 27.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 9.9e-76 289.3 947 27.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.9e-75 287.0 934 27.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.9e-74 285.0 240 61.7
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 6.4e-67 260.0 193 69.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 6.4e-67 260.0 707 30.7
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 7.1e-66 256.5 209 61.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.2e-60 239.2 192 64.6
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 8.1e-54 216.5 755 28.1
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.4e-53 215.7 345 36.8
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.9e-48 197.6 261 45.2
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 6.9e-45 186.8 190 51.6
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.0e-43 183.0 144 68.8
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.9e-43 181.4 488 27.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 3.5e-41 174.5 328 35.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.7e-39 167.2 215 42.3
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 3.7e-38 164.5 96 83.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 4.1e-37 161.0 146 61.6
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-36 159.1 95 81.1
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.6e-36 158.3 197 43.1
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.6e-33 147.9 165 51.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.0e-32 146.4 186 42.5
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.3e-32 145.2 121 61.2
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.3e-31 141.4 101 75.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.6e-28 131.7 179 41.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 6.1e-25 120.6 84 75.0
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.8e-24 119.0 195 39.5
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.8e-22 110.9 129 57.4
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.0e-19 103.2 193 31.1
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-19 102.8 352 25.9
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.4e-18 99.4 103 55.3
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 8.0e-17 93.6 183 33.3
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-16 92.8 187 32.6
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 5.2e-16 90.9 200 33.0
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 8.8e-16 90.1 50 92.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.7e-14 84.7 150 37.3
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.8e-14 84.3 108 48.1
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.1e-13 80.1 175 31.4
Psat7g011720 Pisum sativum HOM05D000081 ORTHO05D004978 5.0e-11 74.3 72 55.6
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.1e-09 68.9 136 36.0


User provided reference genes

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