Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 1.5e-80 302.8 152 100.0
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 9.4e-38 160.6 148 59.5
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 1.4e-36 156.8 133 61.7
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 2.8e-34 149.1 154 56.5
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 4.8e-34 148.3 154 56.5
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 1.2e-32 143.7 151 54.3
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 2.9e-31 139.0 152 55.3
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 8.5e-31 137.5 149 53.0
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 1.9e-30 136.3 154 52.6
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 2.1e-29 132.9 126 54.8
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 9.5e-22 107.5 150 41.3
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 1.4e-20 103.6 157 43.3
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 6.8e-20 101.3 157 43.9
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 7.5e-19 97.8 150 40.7
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 4.9e-18 95.1 150 38.7
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 6.3e-18 94.7 157 41.4
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 6.3e-18 94.7 158 40.5
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 2.4e-17 92.8 164 41.5
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 2.0e-16 89.7 158 40.5
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 2.0e-16 89.7 142 40.8
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 3.5e-16 89.0 127 38.6
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 7.8e-16 87.8 132 42.4
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 2.3e-15 86.3 151 36.4
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 2.9e-15 85.9 131 41.2
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 2.9e-15 85.9 156 38.5
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.9e-15 85.9 116 42.2
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 2.9e-15 85.9 139 40.3
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 3.8e-15 85.5 149 40.9
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 8.6e-15 84.3 109 42.2
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 7.3e-14 81.3 156 39.1
VMungo1309G0126 Vigna mungo HOM05D007643 ORTHO05D007801 9.5e-14 80.9 81 59.3
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 1.6e-13 80.1 89 44.9
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 2.8e-13 79.3 95 43.2
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 3.6e-13 79.0 137 38.0
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 8.0e-13 77.8 104 43.3
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.0e-12 77.4 154 39.6
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.4e-12 77.0 159 35.2
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 3.0e-12 75.9 144 36.8
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 3.0e-12 75.9 159 34.6
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 4.0e-12 75.5 144 36.8
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 4.0e-12 75.5 167 38.9
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 6.8e-12 74.7 121 42.1
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 2.0e-11 73.2 88 45.5
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 2.0e-11 73.2 144 36.1
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 2.6e-11 72.8 140 35.0
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 9.8e-11 70.9 108 42.6
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 2.2e-10 69.7 98 41.8
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 4.9e-10 68.6 107 38.3
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 8.3e-10 67.8 144 35.4
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 8.3e-10 67.8 168 35.1
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.1e-09 67.4 131 38.2
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 1.8e-09 66.6 153 32.0
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 2.4e-09 66.2 93 37.6
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 3.2e-09 65.9 145 33.8
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 4.1e-09 65.5 92 47.8
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 5.4e-09 65.1 85 45.9
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 7.0e-09 64.7 110 37.3
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 9.2e-09 64.3 153 31.4
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 2.7e-08 62.8 117 34.2
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 3.5e-08 62.4 106 35.8
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 4.6e-08 62.0 128 35.2
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 4.6e-08 62.0 87 43.7
BcaC06g33198 Brassica carinata HOM05D010173 ORTHO05D007801 5.9e-08 61.6 115 33.0
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 5.9e-08 61.6 131 35.9
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 2.3e-07 59.7 90 42.2
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 5.0e-07 58.5 93 34.4
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 5.0e-07 58.5 148 35.8
BraA03t13778Z Brassica rapa HOM05D010173 ORTHO05D007801 6.6e-07 58.2 123 32.5
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 1.1e-06 57.4 107 35.5
AL3G41380 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.5e-06 57.0 113 31.9
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 1.5e-06 57.0 88 40.9
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 1.5e-06 57.0 98 34.7
AL269U10022 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.9e-06 56.6 114 31.6
AL269U10040 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.9e-06 56.6 114 31.6
AL269U10050 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.9e-06 56.6 114 31.6
AL3G41370 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.9e-06 56.6 114 31.6
AL3G41390 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.9e-06 56.6 114 31.6
AT5G60840 Arabidopsis thaliana HOM05D010173 ORTHO05D007801 1.9e-06 56.6 115 37.4
AL269U10030 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.5e-06 56.2 113 31.9
A03p46540 Brassica napus HOM05D010173 ORTHO05D007801 7.3e-06 54.7 126 32.5
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 9.5e-06 54.3 129 34.1
BcaNung05759 Brassica carinata HOM05D010173 ORTHO05D007801 9.5e-06 54.3 100 33.0


User provided reference genes

Program Settings