Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 5.7e-231 803.9 409 100.0
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 2.1e-84 317.0 274 62.4
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 7.0e-80 302.0 274 59.5
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 4.7e-76 289.3 270 56.7
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 4.0e-67 259.6 272 53.3
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 4.4e-66 256.1 270 52.6
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 4.6e-63 246.1 273 47.6
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 4.6e-63 246.1 270 50.0
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 8.6e-62 241.9 272 50.4
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 1.9e-61 240.7 281 47.7
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 1.2e-55 221.5 273 47.3
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 1.1e-53 214.9 272 40.8
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 4.3e-53 213.0 273 43.6
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 7.3e-53 212.2 273 41.4
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 1.4e-48 198.0 272 40.1
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 4.6e-47 193.0 273 38.1
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 3.9e-46 189.9 274 39.8
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 4.3e-45 186.4 276 37.7
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 1.8e-43 181.0 273 38.1
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 3.1e-43 180.3 272 35.7
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 5.8e-42 176.0 273 35.5
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 1.3e-41 174.9 268 39.2
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 2.4e-40 170.6 270 36.3
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 1.2e-39 168.3 272 34.2
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 2.7e-39 167.2 271 35.4
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 2.7e-39 167.2 273 37.0
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 6.0e-39 166.0 274 34.3
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 1.3e-38 164.9 273 34.1
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 2.5e-37 160.6 274 33.9
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.6e-37 159.5 250 36.4
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 7.4e-37 159.1 272 35.3
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 7.4e-37 159.1 273 31.9
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 7.4e-37 159.1 276 35.1
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 9.6e-37 158.7 272 33.5
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 1.3e-36 158.3 273 31.9
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 1.6e-36 157.9 274 32.5
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 2.1e-36 157.5 273 31.9
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 2.8e-36 157.1 272 34.2
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 4.8e-36 156.4 272 33.5
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 8.1e-36 155.6 250 36.0
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 8.1e-36 155.6 250 36.0
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 3.1e-35 153.7 273 35.2
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 3.1e-35 153.7 273 35.9
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 9.0e-35 152.1 272 32.7
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 1.2e-34 151.8 273 33.0
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 2.0e-34 151.0 272 32.7
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 4.5e-34 149.8 273 32.2
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 4.9e-33 146.4 280 31.1
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 4.9e-33 146.4 272 30.9
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 6.5e-33 146.0 272 32.4
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 2.5e-32 144.1 274 33.6
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 5.5e-32 142.9 273 34.4
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 9.3e-32 142.1 273 31.9
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 9.3e-32 142.1 273 31.9
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 2.7e-31 140.6 274 32.1
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 2.7e-31 140.6 272 32.7
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 3.5e-31 140.2 253 32.8
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 6.0e-31 139.4 273 32.2
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 3.0e-30 137.1 272 33.1
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 5.1e-30 136.3 273 31.1
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 8.7e-30 135.6 273 31.5
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 1.1e-29 135.2 276 31.9
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 1.5e-29 134.8 256 31.6
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 3.3e-29 133.7 272 29.0
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 3.3e-29 133.7 273 30.0
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 1.3e-28 131.7 272 29.0
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 3.7e-28 130.2 277 29.2
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 4.8e-28 129.8 273 29.7
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 4.8e-28 129.8 279 30.1
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 1.8e-27 127.9 273 30.0
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.2e-26 125.2 277 28.2
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 1.7e-25 121.3 272 30.9
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 1.1e-21 108.6 273 27.1
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.7e-21 106.3 250 30.8
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 1.4e-19 101.7 116 41.4
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 4.1e-19 100.1 276 26.1
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 5.9e-18 96.3 272 27.9
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 9.4e-16 89.0 239 25.9
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 1.1e-13 82.0 277 24.5
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 7.7e-10 69.3 100 32.0
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 5.0e-09 66.6 177 28.8
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 8.5e-09 65.9 170 25.9
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.1e-08 65.5 128 26.6
Hund17562 Selenicereus undatus HOM05D007884 ORTHO05D009968 2.5e-08 64.3 77 39.0
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 3.2e-08 63.9 187 25.7
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 4.2e-08 63.5 103 35.0
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 7.2e-08 62.8 169 25.4
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 7.2e-08 62.8 201 22.9
AT5G18475 Arabidopsis thaliana HOM05D007660 ORTHO05D009442 9.4e-08 62.4 93 36.6
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 9.4e-08 62.4 169 25.4
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 9.4e-08 62.4 197 22.8
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 9.4e-08 62.4 203 23.2
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 9.4e-08 62.4 169 24.9
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 1.2e-07 62.0 189 25.9
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.6e-07 61.6 169 25.4
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.6e-07 61.6 203 23.2
BcaB05g23329 Brassica carinata HOM05D007660 ORTHO05D009442 2.7e-07 60.8 89 36.0
Medtr6g075180 Medicago truncatula HOM05D007145 ORTHO05D008952 2.7e-07 60.8 133 27.8
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 2.7e-07 60.8 192 23.4
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.7e-07 60.1 203 22.7
Lalb_Chr24g0398401 Lupinus albus HOM05D007145 ORTHO05D008952 4.7e-07 60.1 131 29.8
ECA233G6190 Erigeron canadensis HOM05D007145 ORTHO05D008952 6.1e-07 59.7 135 28.9
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 7.9e-07 59.3 209 25.4
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 7.9e-07 59.3 209 25.4
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 7.9e-07 59.3 202 22.3
Ca_23675_v3 Cicer arietinum L. HOM05D007145 ORTHO05D008952 7.9e-07 59.3 102 33.3
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 7.9e-07 59.3 194 23.2
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 7.9e-07 59.3 95 34.7
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 1.0e-06 58.9 169 25.4
C07p39380 Brassica napus HOM05D001779 ORTHO05D001753 1.0e-06 58.9 169 26.0
BolC7t44458H Brassica oleracea HOM05D001779 ORTHO05D001753 1.0e-06 58.9 169 26.0
BraA02t05452Z Brassica rapa HOM05D007660 ORTHO05D009442 1.0e-06 58.9 96 33.3
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 1.0e-06 58.9 206 22.3
MBI04_g24603_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 1.0e-06 58.9 113 26.5
Psat6g071360 Pisum sativum HOM05D007145 ORTHO05D008952 1.0e-06 58.9 102 33.3
arahy.Tifrunner.gnm1.ann1.0N6WQ2 Arachis hypogaea HOM05D000855 ORTHO05D008530 1.4e-06 58.5 230 23.9
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 1.4e-06 58.5 169 25.4
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 1.4e-06 58.5 169 24.3
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 1.4e-06 58.5 194 22.7
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.4e-06 58.5 136 29.4
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 1.8e-06 58.2 193 25.4
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 1.8e-06 58.2 203 21.7
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 1.8e-06 58.2 149 24.8
TPR.G28018 Trifolium pratense HOM05D007145 ORTHO05D008952 1.8e-06 58.2 128 30.5
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.3e-06 57.8 128 23.4
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 2.3e-06 57.8 204 23.0
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.3e-06 57.8 157 26.1
CSS0043356 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.3e-06 57.8 219 23.3
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 2.3e-06 57.8 136 28.7
Lsat_1_v5_gn_6_5460 Lactuca sativa HOM05D007145 ORTHO05D008952 2.3e-06 57.8 137 27.7
QL10p041196 Quercus lobata HOM05D005973 ORTHO05D007285 2.3e-06 57.8 189 22.8
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 2.3e-06 57.8 140 22.1
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 3.0e-06 57.4 101 30.7
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 3.0e-06 57.4 131 28.2
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 3.0e-06 57.4 122 27.9
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 3.9e-06 57.0 112 27.7
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 3.9e-06 57.0 153 24.2
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.9e-06 57.0 124 30.6
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.9e-06 57.0 201 22.4
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.9e-06 57.0 201 22.4
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 3.9e-06 57.0 127 27.6
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 3.9e-06 57.0 197 23.4
Sp5g35650 Schrenkiella parvula HOM05D000891 ORTHO05D000761 3.9e-06 57.0 191 26.7
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 3.9e-06 57.0 146 29.5
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 5.1e-06 56.6 237 24.5
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 5.1e-06 56.6 96 32.3
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 5.1e-06 56.6 124 30.6
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 5.1e-06 56.6 151 24.5
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.1e-06 56.6 124 30.6
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 5.1e-06 56.6 172 23.3
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 5.1e-06 56.6 239 23.0
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 5.1e-06 56.6 112 27.7
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 5.1e-06 56.6 172 24.4
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 5.1e-06 56.6 174 24.1
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 6.7e-06 56.2 125 26.4
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 6.7e-06 56.2 238 20.6
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 6.7e-06 56.2 130 26.9
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 6.7e-06 56.2 233 19.7
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 6.7e-06 56.2 115 28.7
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 6.7e-06 56.2 94 28.7
SMO364G0108 Selaginella moellendorffii HOM05D002479 ORTHO05D002675 6.7e-06 56.2 130 23.8
Sopen02g013930 Solanum pennellii HOM05D000891 ORTHO05D000761 6.7e-06 56.2 174 24.1
PGSC0003DMG400015467 Solanum tuberosum HOM05D000891 ORTHO05D000761 6.7e-06 56.2 174 24.1
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 8.8e-06 55.8 150 26.7
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 8.8e-06 55.8 157 22.3
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 8.8e-06 55.8 118 29.7
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 8.8e-06 55.8 194 22.2


User provided reference genes

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