Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 2030.8 1081 100.0
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1904.4 1084 93.7
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1894.0 1084 93.3
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1821.6 1083 90.8
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1811.2 1086 90.1
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1810.4 1097 89.2
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1808.5 1081 90.1
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1807.0 1047 91.3
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1805.8 1083 88.9
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1782.3 1086 88.5
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1773.1 1086 87.8
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1658.3 1098 80.6
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1639.4 1085 81.2
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1622.8 1058 81.8
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1621.3 1090 79.9
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1600.9 1077 79.2
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1599.7 1092 78.5
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1597.4 1072 78.4
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1594.3 1077 79.6
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1593.9 1094 77.0
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1582.4 1092 79.5
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1573.5 1100 79.2
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1571.2 1092 76.2
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1570.4 1088 77.2
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1569.3 1092 77.0
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1563.5 1090 77.2
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1563.5 1073 78.6
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1560.0 1078 77.4
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1559.7 1091 76.1
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1555.4 1088 77.1
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1553.9 1093 77.9
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1549.3 1094 75.0
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1548.9 1094 76.8
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1548.5 1093 77.3
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1545.0 1092 75.8
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1545.0 1092 75.8
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1543.5 1057 78.8
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1539.6 1118 75.1
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1538.5 1093 76.1
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1537.7 1088 76.3
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1533.9 1087 75.3
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1533.1 1089 76.0
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1530.8 1114 73.2
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1529.2 1134 74.1
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1527.3 1073 76.0
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1511.9 1094 75.0
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1509.6 1086 73.6
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1508.8 868 86.8
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1506.5 1078 74.1
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1503.4 869 85.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1502.3 869 85.7
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1501.9 869 85.6
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1500.3 1195 69.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1496.1 1118 73.7
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1492.6 1086 74.5
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1488.8 966 77.8
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1487.2 1067 75.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1465.3 1094 72.1
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1463.4 1102 72.1
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1462.2 932 77.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1461.8 1094 71.6
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1457.2 1105 70.7
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1455.7 1097 72.1
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1454.5 931 77.6
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1454.1 1085 72.6
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1452.2 1084 71.0
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1451.8 932 76.9
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1445.6 1075 73.3
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1444.1 1085 73.2
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1443.7 1070 70.5
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1436.4 1070 73.5
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 1038 74.3
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1427.5 933 76.2
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1427.5 933 76.2
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 933 76.1
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 933 76.1
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1424.5 869 82.5
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1423.3 967 75.0
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1412.1 1087 70.2
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1410.2 1110 69.8
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1403.7 1126 69.3
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1401.7 928 75.4
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 1085 70.3
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1389.4 997 72.7
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1388.2 1102 69.1
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1387.9 1094 72.4
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1381.3 1138 68.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1377.8 1089 67.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1362.8 1050 71.0
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1360.9 1048 69.3
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1344.7 1093 66.7
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1323.5 1206 62.1
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1314.7 1246 59.6
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1305.0 1043 66.8
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1292.3 901 73.6
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1288.1 925 71.4
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1275.8 1093 66.1
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1251.9 1062 62.3
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1201.4 927 65.5
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1195.3 881 67.1
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1145.6 927 62.4
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1109.4 692 80.1
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1109.0 690 80.1
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1099.3 1093 60.5
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 1.4e-281 973.4 634 78.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.6e-277 959.9 743 63.7
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 4.5e-275 951.8 690 71.0
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.0e-271 940.6 546 84.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 5.9e-259 898.3 614 73.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-199 700.7 570 63.5
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 9.6e-185 651.7 525 75.2
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 4.3e-161 573.2 445 64.9
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.7e-155 553.9 318 85.5
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 5.5e-132 476.5 391 72.9
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 3.6e-123 447.2 368 59.0
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.4e-122 445.3 394 68.8
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.8e-122 444.9 450 55.1
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 3.5e-102 377.5 247 82.2
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.2e-96 358.2 233 76.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.7e-93 348.6 276 65.2
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 8.6e-93 346.3 230 73.9
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.1e-92 345.9 322 58.4
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.7e-88 332.0 1066 27.8
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 4.7e-83 313.9 1040 26.9
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 5.8e-65 253.8 190 65.8
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-64 252.3 134 87.3
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.6e-60 236.5 388 38.4
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.1e-54 218.8 145 70.3
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 8.7e-45 186.8 217 48.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 1.1e-44 186.4 99 89.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 1.9e-44 185.7 243 50.6
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.3e-42 177.6 107 81.3
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 5.0e-40 171.0 88 95.5
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.0e-40 171.0 149 60.4
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-39 169.9 108 75.0
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.5e-39 168.7 224 43.3
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.2e-39 168.3 483 29.6
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 9.3e-39 166.8 103 72.8
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 4.3e-36 157.9 150 62.0
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.8e-35 155.2 150 61.3
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.4e-34 152.9 236 41.1
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.4e-33 148.3 119 59.7
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 4.5e-33 147.9 188 44.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 6.5e-32 144.1 86 88.4
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.0e-28 132.5 93 72.0
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.9e-26 124.0 108 62.0
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.9e-26 124.0 108 62.0
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.9e-26 124.0 108 62.0
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.7e-25 120.6 89 71.9
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 2.9e-24 118.6 298 37.6
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 2.7e-22 112.1 62 87.1
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 7.9e-22 110.5 79 68.4
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.3e-20 105.1 61 82.0
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 4.4e-20 104.8 97 64.9
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.4e-18 99.0 115 53.9
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.1e-18 98.2 67 68.7
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.3e-18 97.8 61 70.5
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.5e-17 96.3 134 43.3
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.7e-17 94.0 59 74.6
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 7.7e-17 94.0 47 100.0
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-16 92.8 79 58.2
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-16 92.8 80 58.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 8.5e-16 90.5 51 82.4
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.3e-12 78.6 106 44.3
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 2.8e-11 75.5 77 53.2
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 3.7e-11 75.1 101 52.5
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 7.0e-10 70.9 77 50.6
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.5e-09 68.6 180 35.6
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 6.5e-08 64.3 72 47.2
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 4.2e-07 61.6 66 47.0
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 4.2e-07 61.6 58 55.2


User provided reference genes

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