Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26311_v3 Cicer arietinum L. HOM05D016564 ORTHO05D019006 1.4e-105 386.3 196 100.0
Medtr3g073650 Medicago truncatula HOM05D016564 ORTHO05D019006 9.3e-38 161.0 211 50.7
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 1.3e-36 157.1 211 49.3
Phvul.009G027400 Phaseolus vulgaris HOM05D016564 ORTHO05D019006 4.5e-24 115.5 222 37.4
VMungo1309G1791 Vigna mungo HOM05D016564 ORTHO05D019006 8.4e-23 111.3 222 36.9
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 7.1e-22 108.2 240 36.7
Psat5g136440 Pisum sativum HOM05D016564 ORTHO05D019006 9.7e-19 97.8 90 55.6
Lj1g0014138 Lotus japonicus HOM05D016564 ORTHO05D019006 1.4e-12 77.4 226 40.7
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-09 67.8 151 39.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.2e-08 64.3 152 33.6
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.5e-08 63.9 156 36.5
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.6e-08 63.2 152 34.2
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.9e-08 62.0 124 35.5
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 7.7e-08 61.6 144 32.6
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-07 60.8 128 36.7
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.7e-07 60.5 209 29.7
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.2e-07 60.1 138 35.5
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.2e-07 60.1 131 38.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-07 59.7 124 35.5
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.9e-07 59.7 119 38.7
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.8e-07 59.3 157 33.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 5.0e-07 58.9 138 36.2
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.5e-07 58.2 136 38.2
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.5e-07 58.2 136 38.2
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.5e-07 58.2 135 36.3
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 8.5e-07 58.2 79 43.0
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.1e-06 57.8 124 37.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.1e-06 57.8 163 31.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-06 57.8 125 35.2
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-06 57.8 125 36.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.9e-06 57.0 204 30.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.9e-06 57.0 170 34.1
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.5e-06 56.6 148 33.8
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.5e-06 56.6 148 33.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.5e-06 56.6 157 33.8
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.5e-06 56.6 161 34.2
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.2e-06 56.2 139 33.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.2e-06 56.2 125 36.0
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 3.2e-06 56.2 125 36.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.2e-06 55.8 130 36.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 5.5e-06 55.5 70 41.4
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 5.5e-06 55.5 140 34.3
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 5.5e-06 55.5 125 34.4
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 7.2e-06 55.1 135 32.6
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.2e-06 55.1 122 36.1
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 7.2e-06 55.1 142 33.8
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 7.2e-06 55.1 167 34.1
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 7.2e-06 55.1 162 35.2
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 7.2e-06 55.1 168 32.1
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 9.4e-06 54.7 125 35.2
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 9.4e-06 54.7 154 32.5
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 9.4e-06 54.7 157 33.8


User provided reference genes

Program Settings