Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 1.2e-89 333.2 172 100.0
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 9.0e-61 237.3 177 75.7
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 1.4e-58 229.9 169 76.9
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 1.6e-57 226.5 166 75.3
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 2.4e-50 202.6 168 67.9
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 1.2e-49 200.3 166 68.1
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 3.0e-48 195.7 166 67.5
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 5.1e-48 194.9 177 66.1
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 6.9e-45 184.5 178 61.8
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 2.0e-44 183.0 178 61.2
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 7.1e-42 174.5 179 57.5
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 6.0e-41 171.4 169 55.6
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 2.3e-40 169.5 140 66.4
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 3.0e-40 169.1 97 87.6
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 2.5e-39 166.0 173 56.6
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 2.5e-39 166.0 181 55.8
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 2.5e-39 166.0 171 57.9
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 3.3e-39 165.6 96 85.4
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 4.3e-39 165.2 174 58.6
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 5.6e-39 164.9 168 57.1
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 2.1e-38 162.9 180 56.1
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 2.1e-38 162.9 163 57.7
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 2.8e-38 162.5 101 80.2
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 2.8e-38 162.5 101 80.2
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 3.7e-38 162.2 179 55.9
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 4.8e-38 161.8 104 80.8
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 6.2e-38 161.4 100 84.0
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 8.2e-38 161.0 136 65.4
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 8.2e-38 161.0 164 57.9
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.4e-37 160.2 179 55.3
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 2.4e-37 159.5 166 60.2
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 3.1e-37 159.1 181 54.1
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 4.0e-37 158.7 160 58.1
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 6.9e-37 157.9 106 75.5
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 9.0e-37 157.5 99 82.8
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 9.0e-37 157.5 105 76.2
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.2e-36 157.1 99 80.8
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 1.5e-36 156.8 105 75.2
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 1.5e-36 156.8 96 83.3
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 2.6e-36 156.0 159 57.9
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.6e-36 156.0 96 82.3
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 5.8e-36 154.8 98 80.6
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 5.8e-36 154.8 102 79.4
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 5.8e-36 154.8 98 78.6
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 1.0e-35 154.1 95 78.9
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 1.3e-35 153.7 99 79.8
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.7e-35 153.3 98 78.6
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 1.7e-35 153.3 174 51.7
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 2.2e-35 152.9 98 77.6
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 2.9e-35 152.5 98 78.6
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 3.8e-35 152.1 169 55.6
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 4.9e-35 151.8 91 82.4
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 4.9e-35 151.8 95 80.0
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 4.9e-35 151.8 100 77.0
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 4.9e-35 151.8 95 78.9
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 4.9e-35 151.8 98 77.6
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 6.5e-35 151.4 95 80.0
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 6.5e-35 151.4 172 54.1
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 6.5e-35 151.4 172 54.1
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 6.5e-35 151.4 172 54.1
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 6.5e-35 151.4 135 62.2
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 6.5e-35 151.4 98 77.6
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 6.5e-35 151.4 177 54.8
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 8.4e-35 151.0 95 78.9
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 8.4e-35 151.0 101 76.2
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 1.1e-34 150.6 97 79.4
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 1.4e-34 150.2 181 50.3
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 1.9e-34 149.8 95 78.9
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 1.9e-34 149.8 95 78.9
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 1.9e-34 149.8 107 72.0
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.5e-34 149.4 103 73.8
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 2.5e-34 149.4 97 77.3
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 2.5e-34 149.4 95 77.9
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 2.5e-34 149.4 95 77.9
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 2.5e-34 149.4 95 77.9
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 2.5e-34 149.4 98 75.5
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 2.5e-34 149.4 104 75.0
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 2.5e-34 149.4 95 77.9
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.5e-34 149.4 156 57.1
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 5.5e-34 148.3 127 64.6
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 1.2e-33 147.1 95 76.8
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 1.2e-33 147.1 95 76.8
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 2.7e-33 146.0 159 56.6
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 3.5e-33 145.6 88 81.8
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 1.8e-32 143.3 100 73.0
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 1.8e-32 143.3 167 55.1
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 2.3e-32 142.9 148 57.4
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 2.3e-32 142.9 95 74.7
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 3.0e-32 142.5 83 86.7
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 3.9e-32 142.1 79 88.6
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 5.1e-32 141.7 98 73.5
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 5.1e-32 141.7 99 72.7
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 3.3e-31 139.0 87 77.0
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 5.7e-31 138.3 97 72.2
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 2.8e-30 136.0 139 56.1
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 3.7e-30 135.6 96 71.9
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 4.8e-30 135.2 98 70.4
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 6.3e-30 134.8 88 75.0
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 2.6e-28 129.4 77 83.1
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 2.6e-28 129.4 99 67.7
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 7.6e-28 127.9 74 85.1
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 1.3e-27 127.1 92 68.5
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 2.2e-27 126.3 86 72.1
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.4e-26 123.6 78 79.5
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 1.2e-25 120.6 105 61.9
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 9.7e-23 110.9 102 60.8
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 6.9e-21 104.8 77 64.9
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.2e-20 104.0 83 61.4
TPR.G35538 Trifolium pratense HOM05D006461 ORTHO05D008199 8.5e-19 97.8 97 62.9
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 2.1e-17 93.2 158 40.5
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 2.1e-17 93.2 158 40.5
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 4.7e-17 92.0 83 60.2
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 3.0e-16 89.4 79 48.1
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 2.6e-15 86.3 50 86.0
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 5.7e-15 85.1 49 83.7
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 2.2e-14 83.2 104 51.0
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 3.8e-11 72.4 44 77.3
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 5.5e-10 68.6 49 69.4
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 1.6e-09 67.0 47 68.1
Mapoly0051s0029 Marchantia polymorpha HOM05D002854 ORTHO05D003051 7.4e-07 58.2 125 36.8
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 9.7e-07 57.8 44 70.5
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 1.7e-06 57.0 73 52.1
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 2.8e-06 56.2 50 62.0
ClCG01G014880 Citrullus lanatus HOM05D002854 ORTHO05D003051 6.3e-06 55.1 68 48.5
CsaV3_1G007440 Cucumis sativus L. HOM05D002854 ORTHO05D003051 6.3e-06 55.1 68 48.5


User provided reference genes

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