Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.3e-229 798.5 401 100.0
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 5.1e-99 365.5 394 58.4
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.3e-91 340.1 368 58.7
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 4.8e-89 332.4 415 53.0
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 4.6e-84 315.8 316 64.6
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 4.5e-79 299.3 391 49.6
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 7.6e-79 298.5 389 50.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 8.7e-67 258.5 392 47.2
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 7.2e-61 238.8 358 46.6
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 1.2e-60 238.0 361 45.2
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 4.5e-55 219.5 413 43.3
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.1e-44 184.1 399 35.3
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.3e-40 169.5 391 36.1
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 7.0e-40 169.1 373 35.7
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 9.1e-40 168.7 415 35.2
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.2e-39 168.3 391 35.8
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 4.5e-39 166.4 327 39.8
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 4.5e-39 166.4 346 38.7
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 5.9e-39 166.0 401 33.7
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.0e-38 165.2 295 36.3
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 8.5e-38 162.2 305 35.1
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 4.2e-37 159.8 360 33.6
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 5.5e-37 159.5 434 36.2
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.6e-36 157.9 366 35.8
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.6e-36 157.9 414 33.1
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.1e-36 157.5 398 35.4
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 2.7e-36 157.1 416 32.2
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 3.6e-36 156.8 304 35.5
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 5.2e-35 152.9 315 34.9
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 6.8e-35 152.5 292 35.3
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 8.8e-35 152.1 390 32.6
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 1.5e-34 151.4 397 30.0
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 2.0e-34 151.0 337 33.8
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.0e-34 151.0 309 35.6
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 5.7e-34 149.4 343 39.1
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 5.7e-34 149.4 368 34.8
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 7.5e-34 149.1 422 33.4
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.2e-33 147.5 321 36.4
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 4.8e-33 146.4 371 34.0
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.4e-32 144.1 213 42.7
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 3.1e-32 143.7 200 47.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 4.1e-32 143.3 359 33.1
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 5.4e-32 142.9 341 34.9
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 9.1e-32 142.1 289 37.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 1.2e-31 141.7 305 33.4
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.2e-31 141.7 308 33.8
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.0e-31 141.0 407 33.7
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 3.5e-31 140.2 362 35.1
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 5.9e-31 139.4 327 36.4
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 2.9e-30 137.1 286 32.5
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 3.8e-30 136.7 350 33.7
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 3.8e-30 136.7 399 31.3
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.9e-29 134.4 301 38.5
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 2.5e-29 134.0 202 42.1
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 4.2e-29 133.3 321 35.5
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 5.5e-29 132.9 190 48.9
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.2e-28 131.7 279 34.8
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.8e-27 127.9 213 44.6
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.8e-27 127.9 215 38.1
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 4.0e-27 126.7 298 34.9
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 8.8e-27 125.6 264 39.4
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.5e-26 124.8 194 45.4
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 4.4e-26 123.2 272 33.8
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 5.7e-26 122.9 280 39.3
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 7.5e-26 122.5 353 32.6
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.7e-25 121.3 282 33.0
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 1.7e-25 121.3 394 32.0
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.8e-25 120.6 279 33.0
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 2.8e-25 120.6 286 36.0
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 4.9e-25 119.8 203 41.4
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 4.9e-25 119.8 275 31.6
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 6.3e-25 119.4 298 33.9
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.8e-24 117.9 159 49.1
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.8e-24 117.9 179 45.8
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 3.1e-24 117.1 286 34.3
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 3.1e-24 117.1 202 39.6
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 7.0e-24 115.9 181 43.1
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.2e-23 115.2 276 34.4
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.2e-23 115.2 366 31.4
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.7e-23 114.0 361 32.1
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 2.7e-23 114.0 176 44.9
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 3.5e-23 113.6 395 28.6
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 4.5e-23 113.2 279 30.5
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 1.0e-22 112.1 277 36.5
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.3e-22 111.7 277 36.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.7e-22 111.3 405 31.1
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.9e-22 110.5 81 61.7
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 2.9e-22 110.5 233 35.2
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 3.8e-22 110.2 366 30.3
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 5.0e-22 109.8 330 29.4
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 6.6e-22 109.4 323 29.7
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.5e-21 108.2 140 40.0
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 1.9e-21 107.8 201 41.3
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.9e-21 107.8 165 40.0
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 2.5e-21 107.5 218 36.2
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 3.3e-21 107.1 279 34.8
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.6e-21 106.3 256 31.6
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 9.5e-21 105.5 188 44.7
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.8e-20 104.0 311 28.6
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 8.0e-20 102.4 200 33.0
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 8.0e-20 102.4 165 37.6
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.0e-19 102.1 232 37.5
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.4e-19 101.7 232 38.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.4e-19 101.7 282 33.0
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.8e-19 101.3 255 33.3
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 6.8e-19 99.4 271 31.4
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 8.9e-19 99.0 300 32.0
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 2.0e-18 97.8 366 30.6
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 2.6e-18 97.4 276 30.1
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 3.4e-18 97.1 80 55.0
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.9e-17 94.0 224 36.6
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 4.1e-16 90.1 89 51.7
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 1.2e-15 88.6 364 28.0
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 6.6e-14 82.8 282 28.0
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.9e-13 81.3 282 29.1
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 9.5e-13 79.0 255 30.2
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 2.1e-12 77.8 79 45.6
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 6.2e-12 76.3 85 42.4
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 4.0e-11 73.6 94 38.3
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 6.8e-11 72.8 85 40.0
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.4e-10 70.5 70 50.0
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.9e-09 66.6 53 49.1
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 8.3e-09 65.9 122 32.8
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 5.4e-08 63.2 401 26.7
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 4.6e-07 60.1 164 32.3
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 3.0e-06 57.4 162 32.1
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 3.0e-06 57.4 200 24.5


User provided reference genes

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