Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.3e-39 166.0 91 100.0
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 5.8e-35 150.6 87 93.1
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 3.3e-30 134.8 87 83.9
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 4.3e-30 134.4 87 82.8
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 1.1e-25 119.8 129 56.6
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 7.1e-25 117.1 87 75.9
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.8e-23 112.5 88 73.9
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 3.0e-23 111.7 139 52.5
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 3.9e-23 111.3 88 72.7
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 5.1e-23 110.9 83 74.7
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 6.7e-23 110.5 88 75.0
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.1e-22 109.8 88 73.9
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 2.0e-19 99.0 63 82.5
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 3.4e-19 98.2 89 64.0
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 1.3e-18 96.3 64 78.1
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 1.3e-18 96.3 89 57.3
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 5.0e-18 94.4 91 58.2
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 6.5e-18 94.0 69 71.0
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 3.2e-17 91.7 89 57.3
Medtr1g045950 Medicago truncatula HOM05D005842 ORTHO05D007077 4.2e-17 91.3 178 39.3
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 9.3e-17 90.1 89 56.2
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 7.9e-16 87.0 85 54.1
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.3e-15 85.5 89 55.1
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 2.3e-15 85.5 89 52.8
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 3.0e-15 85.1 91 56.0
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 3.9e-15 84.7 92 52.2
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.1e-15 84.3 89 55.1
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 8.8e-15 83.6 90 51.1
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.1e-14 83.2 89 56.2
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 1.1e-14 83.2 92 52.2
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.1e-14 83.2 92 52.2
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.5e-14 82.8 89 52.8
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 5.7e-14 80.9 91 50.5
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 7.4e-14 80.5 91 52.7
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 7.4e-14 80.5 91 51.6
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 9.7e-14 80.1 88 55.7
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 3.7e-13 78.2 89 52.8
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.8e-13 77.8 89 50.6
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.4e-12 76.3 91 50.5
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.4e-12 76.3 90 47.8
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 2.4e-12 75.5 85 50.6
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 2.4e-12 75.5 85 50.6
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.4e-12 75.5 89 49.4
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.2e-11 73.2 89 47.2
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 1.2e-11 73.2 88 52.3
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.0e-11 72.4 90 46.7
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 3.4e-11 71.6 85 48.2
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 3.4e-11 71.6 85 48.2
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 5.9e-11 70.9 98 51.0
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 5.9e-11 70.9 85 48.2
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 7.7e-11 70.5 92 51.1
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 2.2e-10 68.9 108 39.8
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 3.8e-10 68.2 72 50.0
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 3.8e-10 68.2 105 47.6
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.8e-10 68.2 90 45.6
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.0e-10 67.8 90 45.6
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.1e-09 66.6 92 47.8
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 1.9e-09 65.9 86 45.3
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 2.5e-09 65.5 92 47.8
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 3.2e-09 65.1 83 47.0
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 4.2e-09 64.7 87 44.8
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 5.5e-09 64.3 86 46.5
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 5.5e-09 64.3 86 46.5
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 5.5e-09 64.3 73 45.2
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 9.4e-09 63.5 108 37.0
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-08 62.8 86 45.3
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 2.1e-08 62.4 72 47.2
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 2.1e-08 62.4 107 43.0
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 2.1e-08 62.4 61 55.7
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 2.7e-08 62.0 92 41.3
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 3.6e-08 61.6 89 42.7
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 3.6e-08 61.6 89 42.7
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 6.1e-08 60.8 88 40.9
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 7.9e-08 60.5 91 46.2
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 1.0e-07 60.1 91 44.0
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-07 59.3 108 36.1
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-07 59.3 108 36.1
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-07 59.3 108 36.1
MELO3C023400.2 Cucumis melo HOM05D008630 ORTHO05D010727 1.8e-07 59.3 89 49.4
Sed0009523 Sechium edule HOM05D008630 ORTHO05D010727 3.0e-07 58.5 86 46.5
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 3.9e-07 58.2 89 40.4
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 3.9e-07 58.2 74 47.3
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 5.1e-07 57.8 119 33.6
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 6.7e-07 57.4 109 36.7
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 6.7e-07 57.4 109 36.7
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 6.7e-07 57.4 90 44.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 8.8e-07 57.0 74 45.9
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 1.1e-06 56.6 91 40.7
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 1.1e-06 56.6 91 40.7
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 1.1e-06 56.6 91 40.7
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 1.1e-06 56.6 91 40.7
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.5e-06 56.2 71 43.7
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 2.0e-06 55.8 108 36.1
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 2.0e-06 55.8 85 43.5
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 2.0e-06 55.8 91 40.7
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 4.4e-06 54.7 78 42.3
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 5.7e-06 54.3 108 36.1
Cpa.g.sc336.6 Carica papaya HOM05D008630 ORTHO05D010727 7.4e-06 53.9 81 42.0
Cfa002012 Carpinus fangiana HOM05D010524 ORTHO05D010461 7.4e-06 53.9 41 63.4
Haze_16510 Corylus avellana HOM05D010524 ORTHO05D010461 7.4e-06 53.9 43 60.5
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 9.7e-06 53.5 108 34.3
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 9.7e-06 53.5 81 45.7


User provided reference genes

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