Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.9e-108 394.0 208 100.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 3.6e-56 222.2 176 73.9
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.9e-52 209.9 211 62.6
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 3.9e-50 202.2 177 68.9
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 9.5e-49 197.6 176 68.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 8.0e-48 194.5 173 63.6
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 8.9e-47 191.0 176 66.5
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.5e-46 190.3 165 61.2
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.3e-42 177.2 173 60.7
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.7e-42 176.8 150 64.0
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.7e-29 133.7 175 47.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 6.4e-29 131.7 201 42.8
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.1e-28 131.0 161 49.1
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.4e-28 129.8 185 43.8
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 7.1e-28 128.3 174 44.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.6e-27 127.1 185 44.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.7e-27 126.3 178 46.6
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.3e-26 123.2 174 44.8
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 3.0e-26 122.9 164 45.7
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.1e-26 122.1 174 44.8
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 6.6e-26 121.7 178 44.9
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 6.6e-26 121.7 173 44.5
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.1e-25 120.9 174 44.8
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-25 120.9 174 44.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-25 120.6 174 43.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.9e-25 120.2 160 41.2
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.5e-25 119.8 173 44.5
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.6e-25 118.6 155 45.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 5.6e-25 118.6 155 45.2
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.3e-25 118.2 174 44.3
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 9.6e-25 117.9 174 45.4
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 9.6e-25 117.9 169 46.2
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 9.6e-25 117.9 177 44.1
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 9.6e-25 117.9 184 42.9
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.2e-24 117.5 174 43.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.1e-24 116.7 177 44.6
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.8e-24 116.3 206 41.3
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.8e-24 116.3 175 44.6
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.1e-23 114.4 214 36.4
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-23 114.0 174 42.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 3.1e-23 112.8 185 41.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.0e-22 110.2 154 43.5
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 5.8e-22 108.6 179 41.3
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 5.8e-22 108.6 240 34.6
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.4e-21 105.1 180 40.6
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.4e-21 105.1 174 40.8
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.1e-20 104.4 147 43.5
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 2.4e-20 103.2 149 40.9
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 9.3e-20 101.3 147 40.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.6e-19 100.5 164 38.4
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 6.0e-19 98.6 178 37.6
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 5.1e-18 95.5 165 35.8
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.6e-18 95.1 180 40.0
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.1e-17 94.4 178 40.4
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.5e-17 93.2 153 39.9
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.3e-17 92.4 154 39.0
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.6e-17 92.0 153 39.9
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.1e-16 90.1 140 40.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.1e-16 90.1 91 48.4
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 8.1e-16 88.2 153 39.9
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-15 87.4 146 37.7
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-15 87.4 146 37.7
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 1.4e-15 87.4 178 34.8
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 1.8e-15 87.0 155 38.7
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 2.4e-15 86.7 142 38.0
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-15 85.9 132 40.2
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-14 84.0 147 37.4
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.0e-14 83.6 144 36.8
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 2.6e-14 83.2 147 37.4
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 2.6e-14 83.2 147 37.4
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.6e-14 83.2 63 63.5
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 7.6e-14 81.6 172 35.5
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 9.9e-14 81.3 229 28.4
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.7e-13 80.5 130 39.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.2e-13 80.1 83 49.4
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.2e-13 80.1 60 66.7
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.9e-13 79.7 71 60.6
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 4.9e-13 79.0 79 55.7
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-12 77.8 85 51.8
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.4e-12 77.4 81 55.6
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.4e-12 77.4 77 51.9
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.4e-12 76.6 89 44.9
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 2.4e-12 76.6 79 57.0
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 5.4e-12 75.5 79 55.7
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.4e-12 75.5 56 66.1
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 7.1e-12 75.1 144 38.9
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 7.1e-12 75.1 57 57.9
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-11 74.3 146 38.4
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.2e-11 74.3 128 37.5
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.2e-11 74.3 146 38.4
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-11 74.3 128 37.5
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.2e-11 74.3 148 33.8
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.6e-11 73.9 82 47.6
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 2.1e-11 73.6 169 30.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.7e-11 73.2 85 48.2
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.7e-11 73.2 77 54.5
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.7e-11 73.2 151 34.4
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.7e-11 73.2 53 67.9
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.5e-11 72.8 104 43.3
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 4.6e-11 72.4 86 46.5
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 4.6e-11 72.4 86 46.5
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 6.0e-11 72.0 85 51.8
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 6.0e-11 72.0 88 46.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.0e-10 71.2 88 46.6
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.3e-10 70.9 85 51.8
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.3e-10 70.9 85 50.6
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.8e-10 70.5 83 49.4
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.8e-10 70.5 44 70.5
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 3.0e-10 69.7 149 36.9
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 3.0e-10 69.7 82 48.8
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.1e-10 68.9 66 56.1
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 5.1e-10 68.9 65 55.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 5.1e-10 68.9 85 49.4
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 6.7e-10 68.6 86 50.0
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 6.7e-10 68.6 78 51.3
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.7e-10 68.6 56 60.7
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 8.7e-10 68.2 86 52.3
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 8.7e-10 68.2 75 52.0
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 8.7e-10 68.2 76 51.3
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.1e-09 67.8 66 56.1
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 67.8 66 56.1
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.9e-09 67.0 54 68.5
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 2.5e-09 66.6 91 47.3
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.5e-09 66.6 66 54.5
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 2.5e-09 66.6 88 47.7
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.3e-09 66.2 88 45.5
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.6e-09 65.5 76 47.4
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 7.4e-09 65.1 77 46.8
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.4e-09 65.1 79 50.6
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 9.6e-09 64.7 84 45.2
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 9.6e-09 64.7 79 50.6
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.3e-08 64.3 79 49.4
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.3e-08 64.3 90 44.4
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-08 64.3 92 42.4
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.3e-08 64.3 88 45.5
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.3e-08 64.3 80 46.2
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.1e-08 63.5 77 46.8
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.1e-08 63.5 88 44.3
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.1e-08 63.5 80 42.5
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 3.7e-08 62.8 72 45.8
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.7e-08 62.8 103 41.7
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 3.7e-08 62.8 93 43.0
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.7e-08 62.8 77 42.9
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 3.7e-08 62.8 89 41.6
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 3.7e-08 62.8 86 50.0
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 4.8e-08 62.4 137 37.2
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 4.8e-08 62.4 80 46.2
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 8.1e-08 61.6 76 44.7
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.1e-07 61.2 89 44.9
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.4e-07 60.8 77 46.8
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.4e-07 60.8 72 44.4
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 1.8e-07 60.5 74 51.4
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.8e-07 60.5 89 39.3
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.4e-07 60.1 152 30.9
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.4e-07 60.1 44 59.1
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 2.4e-07 60.1 52 59.6
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 3.1e-07 59.7 76 46.1
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.1e-07 59.7 62 54.8
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.1e-07 59.7 88 45.5
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-07 59.3 83 41.0
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 4.0e-07 59.3 83 41.0
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 4.0e-07 59.3 83 41.0
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 4.0e-07 59.3 83 41.0
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 5.3e-07 58.9 262 27.1
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 6.9e-07 58.5 59 57.6
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 9.0e-07 58.2 83 41.0
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 9.0e-07 58.2 83 41.0
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 9.0e-07 58.2 77 41.6
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.2e-06 57.8 150 30.0
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-06 57.8 83 41.0
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.2e-06 57.8 92 40.2
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.5e-06 57.4 69 43.5
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.0e-06 57.0 85 42.4
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 2.0e-06 57.0 127 31.5
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 2.0e-06 57.0 50 64.0
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.6e-06 56.6 71 42.3
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.4e-06 56.2 86 44.2
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.4e-06 56.2 76 44.7
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 4.5e-06 55.8 79 40.5
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 7.6e-06 55.1 77 46.8
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 7.6e-06 55.1 107 34.6
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 9.9e-06 54.7 77 41.6
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.9e-06 54.7 40 70.0


User provided reference genes

Program Settings