Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26123_v3 Cicer arietinum L. HOM05D006557 ORTHO05D008177 1.4e-44 182.6 89 100.0
Medtr7g076590 Medicago truncatula HOM05D006557 ORTHO05D008177 8.8e-28 126.7 73 86.3
TPR.G37774 Trifolium pratense HOM05D006557 ORTHO05D008177 9.7e-27 123.2 73 84.9
Psat3g112120 Pisum sativum HOM05D006557 ORTHO05D008177 8.3e-26 120.2 71 84.5
Glyma.09G263800 Glycine max HOM05D006557 ORTHO05D008177 3.8e-23 111.3 71 74.6
Lj1g0000530 Lotus japonicus HOM05D006557 ORTHO05D008177 5.0e-23 110.9 71 78.9
arahy.Tifrunner.gnm1.ann1.P0RXA9 Arachis hypogaea HOM05D006557 ORTHO05D008177 1.9e-22 109.0 70 78.6
Glyma.18G228300 Glycine max HOM05D006557 ORTHO05D008177 4.2e-22 107.8 71 74.6
Lalb_Chr01g0021061 Lupinus albus HOM05D006557 ORTHO05D008177 1.2e-21 106.3 68 79.4
Phvul.008G069900 Phaseolus vulgaris HOM05D006557 ORTHO05D008177 1.2e-21 106.3 71 73.2
CiPaw.01G052200 Carya illinoinensis HOM05D006557 ORTHO05D008177 3.5e-16 88.2 72 62.5
Haze_15235 Corylus avellana HOM05D006557 ORTHO05D008177 5.9e-16 87.4 89 51.7
Cfa004174 Carpinus fangiana HOM05D006557 ORTHO05D008177 7.7e-16 87.0 89 51.7
PGSC0003DMG400000131 Solanum tuberosum HOM05D006557 ORTHO05D008177 7.7e-16 87.0 71 60.6
Solyc01g091860.4 Solanum lycopersicum HOM05D006557 ORTHO05D008177 1.0e-15 86.7 71 59.2
Sopen01g037630 Solanum pennellii HOM05D006557 ORTHO05D008177 1.7e-15 85.9 71 59.2
CAN.G170.57 Capsicum annuum HOM05D006557 ORTHO05D008177 2.3e-15 85.5 71 57.7
Oeu058605.1 Olea europaea HOM05D006557 ORTHO05D008177 2.3e-15 85.5 84 53.6
Peaxi162Scf00021g00314 Petunia axillaris HOM05D006557 ORTHO05D008177 2.3e-15 85.5 72 59.7
Gohir.A07G144300 Gossypium hirsutum HOM05D006557 ORTHO05D008177 5.0e-15 84.3 77 54.5
Gohir.D07G150201 Gossypium hirsutum HOM05D006557 ORTHO05D008177 6.6e-15 84.0 77 54.5
Cc02_g37160 Coffea canephora HOM05D006557 ORTHO05D008177 8.6e-15 83.6 68 61.8
Nitab4.5_0006706g0040 Nicotiana tabacum HOM05D006557 ORTHO05D008177 8.6e-15 83.6 68 61.8
Gorai.001G172000 Gossypium raimondii HOM05D006557 ORTHO05D008177 1.1e-14 83.2 77 53.2
Rhsim01G0154800 Rhododendron simsii HOM05D006557 ORTHO05D008177 1.5e-14 82.8 74 55.4
HanXRQChr04g0121771 Helianthus annuus HOM05D006557 ORTHO05D008177 1.9e-14 82.4 68 60.3
Sc02g0002240 Simmondsia chinensis HOM05D006557 ORTHO05D008177 2.5e-14 82.0 65 61.5
EL10Ac1g00969 Beta vulgaris HOM05D006557 ORTHO05D008177 3.3e-14 81.6 65 64.6
Nitab4.5_0009025g0010 Nicotiana tabacum HOM05D006557 ORTHO05D008177 3.3e-14 81.6 68 58.8
ClCG01G015140 Citrullus lanatus HOM05D006557 ORTHO05D008177 4.2e-14 81.3 67 59.7
Sed0001202 Sechium edule HOM05D006557 ORTHO05D008177 4.2e-14 81.3 67 58.2
AUR62033372 Chenopodium quinoa HOM05D006557 ORTHO05D008177 5.5e-14 80.9 64 62.5
DCAR_008582 Daucus carota HOM05D006557 ORTHO05D008177 5.5e-14 80.9 60 66.7
ECA236G4623 Erigeron canadensis HOM05D006557 ORTHO05D008177 5.5e-14 80.9 70 55.7
Hund27329 Selenicereus undatus HOM05D006557 ORTHO05D008177 5.5e-14 80.9 65 60.0
CSS0001854 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 7.2e-14 80.5 70 55.7
PSO478G0993 Papaver somniferum HOM05D006557 ORTHO05D008177 7.2e-14 80.5 79 51.9
COL.COLO4_12633 Corchorus olitorius HOM05D006557 ORTHO05D008177 9.5e-14 80.1 86 47.7
Manes.01G262900 Manihot esculenta HOM05D006557 ORTHO05D008177 1.6e-13 79.3 67 56.7
MSTRG.17229 Avicennia marina HOM05D006557 ORTHO05D008177 2.1e-13 79.0 60 65.0
CsaV3_6G041250 Cucumis sativus L. HOM05D006557 ORTHO05D008177 2.1e-13 79.0 67 56.7
CANSAT56G3931 Cannabis sativa HOM05D006557 ORTHO05D008177 2.8e-13 78.6 60 58.3
Actinidia33449 Actinidia chinensis HOM05D006557 ORTHO05D008177 3.6e-13 78.2 67 56.7
Sabra14G0054700 Salix brachista HOM05D006557 ORTHO05D008177 3.6e-13 78.2 67 56.7
Atru.chr5.390 Acer truncatum HOM05D006557 ORTHO05D008177 4.7e-13 77.8 62 61.3
Atru.chr5.396 Acer truncatum HOM05D006557 ORTHO05D008177 4.7e-13 77.8 62 61.3
AUR62004285 Chenopodium quinoa HOM05D006557 ORTHO05D008177 8.0e-13 77.0 59 64.4
MBI04_g40842_MAGBIO Magnolia biondii HOM05D006557 ORTHO05D008177 8.0e-13 77.0 68 57.4
MELO3C024600.2 Cucumis melo HOM05D006557 ORTHO05D008177 1.0e-12 76.6 67 55.2
QL08p050821 Quercus lobata HOM05D006557 ORTHO05D008177 1.8e-12 75.9 67 56.7
TAR375G0852 Trochodendron aralioides HOM05D006557 ORTHO05D008177 2.3e-12 75.5 68 54.4
Aqoxy7G00469 Aquilegia oxysepala HOM05D006557 ORTHO05D008177 4.0e-12 74.7 67 59.7
Thecc.01G369600 Theobroma cacao HOM05D006557 ORTHO05D008177 5.2e-12 74.3 67 55.2
GSVIVG01026363001 Vitis vinifera HOM05D006557 ORTHO05D008177 5.2e-12 74.3 64 56.2
Duzib133G0555 Durio zibethinus HOM05D006557 ORTHO05D008177 6.8e-12 73.9 77 48.1
Lsat_1_v5_gn_7_8181 Lactuca sativa HOM05D006557 ORTHO05D008177 8.9e-12 73.6 65 52.3
Potri.014G077700 Populus trichocarpa HOM05D006557 ORTHO05D008177 8.9e-12 73.6 67 53.7
Nn6g34278 Nelumbo nucifera HOM05D006557 ORTHO05D008177 1.2e-11 73.2 67 53.7
HPP92_025368 Vanilla planifolia HOM05D006557 ORTHO05D008177 1.5e-11 72.8 80 42.5
TWI23G0976 Tripterygium wilfordii HOM05D006557 ORTHO05D008177 2.0e-11 72.4 55 61.8
HPP92_025494 Vanilla planifolia HOM05D006557 ORTHO05D008177 2.0e-11 72.4 87 40.2
Ciclev10019481m.g Citrus clementina HOM05D006557 ORTHO05D008177 2.6e-11 72.0 66 54.5
Eucgr.E00220 Eucalyptus grandis HOM05D006557 ORTHO05D008177 2.6e-11 72.0 57 63.2
Migut.B01677 Erythranthe guttata HOM05D006557 ORTHO05D008177 5.7e-11 70.9 69 53.6
PGR042G0062 Punica granatum HOM05D006557 ORTHO05D008177 9.8e-11 70.1 59 59.3
Aa31LG1G11240 Aethionema arabicum HOM05D006557 ORTHO05D008177 1.3e-10 69.7 71 54.9
Prupe.2G153600 Prunus persica HOM05D006557 ORTHO05D008177 1.3e-10 69.7 85 43.5
AL1G10410 Arabidopsis lyrata HOM05D006557 ORTHO05D008177 2.2e-10 68.9 58 53.4
SalBow3G2355 Salvia bowleyana HOM05D006557 ORTHO05D008177 2.2e-10 68.9 70 50.0
Carub.0001s0032 Capsella rubella HOM05D006557 ORTHO05D008177 2.8e-10 68.6 75 45.3
RcHm_v2.0_Chr1g0352061 Rosa chinensis HOM05D006557 ORTHO05D008177 3.7e-10 68.2 55 58.2
CARHR000440 Cardamine hirsuta HOM05D006557 ORTHO05D008177 4.9e-10 67.8 62 50.0
CDE11G0468 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 6.3e-10 67.4 59 50.8
Pp3c20_15200 Physcomitrium patens HOM05D006557 ORTHO05D008177 6.3e-10 67.4 86 43.0
BraA09t42268Z Brassica rapa HOM05D006557 ORTHO05D008177 1.1e-09 66.6 65 46.2
Zm00001eb269430 Zea mays HOM05D006557 ORTHO05D008177 1.1e-09 66.6 92 44.6
SEGI_15167 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 1.4e-09 66.2 53 62.3
vmacro04846 Vaccinium macrocarpon HOM05D006557 ORTHO05D008177 1.8e-09 65.9 96 40.6
C08p53930 Brassica napus HOM05D006557 ORTHO05D008177 2.4e-09 65.5 65 44.6
BolC8t52906H Brassica oleracea HOM05D006557 ORTHO05D008177 2.4e-09 65.5 65 44.6
Thhalv10007294m.g Eutrema salsugineum HOM05D006557 ORTHO05D008177 2.4e-09 65.5 57 50.9
FvH4_7g12930 Fragaria vesca HOM05D006557 ORTHO05D008177 2.4e-09 65.5 55 56.4
FAN06G2259 Fragaria x ananassa HOM05D006557 ORTHO05D008177 2.4e-09 65.5 55 56.4
FAN06G3640 Fragaria x ananassa HOM05D006557 ORTHO05D008177 2.4e-09 65.5 55 56.4
FAN10G2465 Fragaria x ananassa HOM05D006557 ORTHO05D008177 2.4e-09 65.5 55 56.4
Ca_07047_v3 Cicer arietinum L. HOM05D002445 ORTHO05D002690 9.2e-09 63.5 38 84.2
FAN03G1058 Fragaria x ananassa HOM05D006557 ORTHO05D008177 9.2e-09 63.5 55 54.5
FAN01G0615 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.2e-08 63.2 53 54.7
Os06g0127200 Oryza sativa ssp. japonica HOM05D006557 ORTHO05D008177 1.2e-08 63.2 91 41.8
FAN10G0459 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.6e-08 62.8 55 52.7
ATR0757G115 Amborella trichopoda HOM05D006557 ORTHO05D008177 2.0e-08 62.4 56 58.9
Sp1g00380 Schrenkiella parvula HOM05D006557 ORTHO05D008177 2.7e-08 62.0 60 46.7
Ca_02602_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.9e-08 60.8 36 83.3
Ca_10381_v3 Cicer arietinum L. HOM05D006557 ORTHO05D008177 5.9e-08 60.8 33 90.9
unitig_8.g3814 Utricularia gibba HOM05D006557 ORTHO05D008177 1.7e-07 59.3 69 49.3
unitig_31.g34034 Utricularia gibba HOM05D006557 ORTHO05D008177 6.6e-07 57.4 55 56.4


User provided reference genes

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