Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.6e-68 262.7 140 100.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.7e-63 245.4 140 92.1
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 5.0e-62 241.1 140 90.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.5e-61 236.9 141 88.7
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.8e-60 235.3 140 87.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 8.1e-60 233.8 140 87.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.3e-59 232.3 140 87.1
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.1e-59 231.9 137 87.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 5.2e-59 231.1 137 86.9
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-58 229.6 137 86.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 9.8e-58 226.9 137 85.4
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.2e-55 219.9 137 85.4
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.6e-55 219.5 175 70.3
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.6e-55 218.0 137 83.9
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.6e-55 218.0 137 83.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.0e-55 217.6 137 83.9
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.7e-54 216.1 137 81.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.0e-54 215.3 139 84.2
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.0e-54 215.3 137 83.2
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 3.9e-54 214.9 137 82.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 5.1e-54 214.5 139 82.7
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 6.6e-54 214.2 138 81.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.1e-53 213.4 137 81.0
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.5e-53 213.0 137 81.8
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.3e-53 211.5 137 81.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 4.3e-53 211.5 138 83.3
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 5.6e-53 211.1 137 80.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.3e-53 210.7 137 81.8
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.3e-53 210.7 137 81.8
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 9.5e-53 210.3 137 79.6
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-52 209.9 137 82.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.2e-52 209.9 138 81.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.6e-52 209.5 139 79.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.8e-52 208.8 140 80.7
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.6e-52 208.4 138 81.2
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 3.6e-52 208.4 138 81.2
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 6.2e-52 207.6 137 78.8
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 8.1e-52 207.2 139 80.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 8.1e-52 207.2 139 80.6
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.1e-51 206.8 138 80.4
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-51 206.1 140 79.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.8e-51 206.1 138 81.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.8e-51 206.1 138 80.4
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.1e-51 205.3 137 79.6
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 5.2e-51 204.5 138 80.4
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 6.8e-51 204.1 138 80.4
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 6.8e-51 204.1 138 80.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 6.8e-51 204.1 137 79.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 8.9e-51 203.8 137 78.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.2e-50 203.4 138 80.4
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-50 203.0 137 77.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.0e-50 202.6 138 79.7
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.0e-50 202.6 137 78.8
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 78.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.6e-50 202.2 137 78.8
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.4e-50 201.8 137 76.6
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.4e-50 201.4 137 75.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 5.8e-50 201.1 138 78.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 77.9
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 5.8e-50 201.1 142 75.4
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.8e-50 201.1 137 76.6
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 7.6e-50 200.7 139 77.7
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.3e-49 199.9 139 77.7
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.7e-49 199.5 138 78.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.9e-49 198.7 139 76.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 4.9e-49 198.0 140 76.4
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 6.4e-49 197.6 137 75.2
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 6.4e-49 197.6 139 77.0
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 8.4e-49 197.2 140 75.7
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.1e-48 196.8 139 76.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.1e-48 196.8 146 74.0
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-48 196.4 137 74.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.4e-48 195.7 139 76.3
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 3.2e-48 195.3 137 77.4
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.1e-48 194.9 143 76.2
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.4e-48 194.5 139 76.3
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.4e-48 194.5 139 75.5
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.2e-48 193.7 143 75.5
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-47 192.6 150 72.7
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.1e-47 192.6 150 72.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-47 192.6 138 76.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-47 192.6 138 76.1
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-46 190.3 148 72.3
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.0e-46 188.7 163 66.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.1e-46 188.0 147 71.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 8.6e-46 187.2 114 85.1
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 8.6e-46 187.2 140 75.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 8.6e-46 187.2 159 66.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-45 186.8 143 69.2
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.5e-45 186.4 140 72.1
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 4.3e-45 184.9 139 73.4
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.6e-45 184.5 143 68.5
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 7.3e-45 184.1 151 68.9
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 7.3e-45 184.1 140 71.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-44 183.0 154 67.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-44 183.0 154 67.5
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 2.1e-44 182.6 147 67.3
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.8e-44 182.2 140 72.9
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.8e-44 182.2 151 67.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.8e-44 182.2 145 67.6
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.1e-44 180.6 137 71.5
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 8.9e-43 177.2 138 71.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-42 176.8 134 73.9
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.4e-42 175.3 137 69.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.8e-42 174.5 137 67.2
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 7.6e-42 174.1 176 58.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 9.9e-42 173.7 136 71.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.2e-41 172.6 112 82.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.9e-41 171.4 168 58.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.9e-40 169.5 113 80.5
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.2e-40 168.3 134 71.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.4e-40 167.9 136 65.4
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 6.6e-38 161.0 136 60.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.1e-36 156.0 112 75.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.8e-36 155.6 166 53.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.8e-36 154.8 115 72.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.1e-35 153.7 137 61.3
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.4e-34 148.7 113 72.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.4e-34 148.7 119 69.7
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.8e-33 145.2 128 68.0
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.4e-32 143.3 136 58.1
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 3.2e-32 142.1 85 88.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-32 141.7 134 62.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.5e-31 138.7 134 63.4
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 4.6e-31 138.3 85 85.9
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 4.6e-31 138.3 131 61.1
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 7.9e-31 137.5 166 50.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.1e-29 133.7 108 70.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.3e-28 130.2 136 56.6
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.6e-28 129.8 97 72.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.8e-28 128.3 155 52.3
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.3e-27 124.8 80 85.0
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 9.0e-27 124.0 79 84.8
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.6e-26 122.5 138 51.4
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.2e-25 119.4 76 88.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.9e-25 119.0 79 82.3
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.8e-25 118.6 79 82.3
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.4e-25 117.9 77 84.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 8.4e-25 117.5 114 61.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.9e-24 116.3 137 54.0
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.2e-23 113.6 118 55.1
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.1e-22 108.2 69 81.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.5e-21 105.9 68 82.4
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 7.4e-21 104.4 131 48.1
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.1e-19 100.5 70 72.9
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.0e-19 98.6 69 71.0
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 5.3e-19 98.2 99 58.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.2e-16 89.0 68 72.1
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.7e-15 85.9 58 75.9
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.3e-14 83.6 137 40.9
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.7e-14 81.3 54 79.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.9e-13 79.7 77 55.8
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-10 70.1 72 56.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.5e-10 70.1 72 56.9
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-08 63.5 58 60.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 6.1e-07 58.2 49 59.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 7.9e-07 57.8 51 56.9
PRCOL_00001918 Prasinoderma coloniale HOM05D004301 ORTHO05D005124 7.9e-07 57.8 143 34.3
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-06 57.0 95 44.2
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.3e-06 57.0 51 56.9
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 1.3e-06 57.0 95 44.2


User provided reference genes

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