Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.1e-50 203.0 100 100.0
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.8e-45 185.7 99 89.9
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 5.2e-45 184.1 99 88.9
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 6.8e-45 183.7 99 89.9
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 8.9e-45 183.3 99 89.9
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.5e-44 182.6 100 87.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 2.0e-44 182.2 99 88.9
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 2.6e-44 181.8 100 85.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.4e-44 181.4 99 88.9
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 4.4e-44 181.0 99 86.9
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.8e-44 180.6 98 89.8
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 5.8e-44 180.6 99 87.9
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 5.8e-44 180.6 100 84.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 7.5e-44 180.3 100 86.0
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 7.5e-44 180.3 100 84.0
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 9.9e-44 179.9 100 86.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 9.9e-44 179.9 100 85.0
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.2e-43 178.7 99 87.9
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 4.9e-43 177.6 100 85.0
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 6.4e-43 177.2 100 84.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 6.4e-43 177.2 100 83.0
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 6.4e-43 177.2 99 82.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 8.3e-43 176.8 100 83.0
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 8.3e-43 176.8 100 82.0
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.1e-42 176.4 100 82.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.1e-42 176.4 99 82.8
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.4e-42 176.0 100 82.0
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.9e-42 175.6 99 86.9
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.9e-42 175.6 100 82.0
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.9e-42 175.6 100 82.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 2.4e-42 175.3 97 85.6
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 2.4e-42 175.3 97 85.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.4e-42 175.3 99 83.8
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.4e-42 175.3 99 82.8
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.4e-42 175.3 99 81.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.4e-42 175.3 99 81.8
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 3.2e-42 174.9 100 82.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 3.2e-42 174.9 99 82.8
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.2e-42 174.9 99 82.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 3.2e-42 174.9 100 83.0
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 4.1e-42 174.5 99 82.8
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 4.1e-42 174.5 100 83.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.1e-42 174.5 100 82.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 5.4e-42 174.1 100 81.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.4e-42 174.1 100 83.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.4e-42 174.1 100 83.0
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 5.4e-42 174.1 100 83.0
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 5.4e-42 174.1 99 81.8
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 7.1e-42 173.7 99 80.8
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 7.1e-42 173.7 99 80.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 7.1e-42 173.7 100 83.0
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 9.2e-42 173.3 98 81.6
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 9.2e-42 173.3 99 80.8
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.2e-41 172.9 99 80.8
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.2e-41 172.9 100 82.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.2e-41 172.9 99 81.8
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.2e-41 172.9 99 79.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.6e-41 172.6 100 80.0
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-41 172.6 99 81.8
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-41 172.6 99 81.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.6e-41 172.6 100 81.0
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.6e-41 172.6 100 80.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 80.8
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 81.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 80.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 81.8
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 80.8
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 80.8
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 2.1e-41 172.2 99 80.8
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 2.1e-41 172.2 100 79.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.7e-41 171.8 100 82.0
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.7e-41 171.8 99 78.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 3.5e-41 171.4 100 80.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 4.6e-41 171.0 100 81.0
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 4.6e-41 171.0 100 80.0
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 6.0e-41 170.6 99 80.8
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 6.0e-41 170.6 100 79.0
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 6.0e-41 170.6 98 78.6
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 6.0e-41 170.6 100 82.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 6.0e-41 170.6 100 82.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 6.0e-41 170.6 100 81.0
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 7.8e-41 170.2 99 77.8
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 7.8e-41 170.2 97 80.4
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 80.0
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 79.0
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.0e-40 169.9 98 80.6
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.0e-40 169.9 98 77.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 79.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 77.0
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.3e-40 169.5 100 80.0
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-40 169.5 100 80.0
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.7e-40 169.1 100 78.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.7e-40 169.1 100 81.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.3e-40 168.7 98 77.6
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.3e-40 168.7 100 82.0
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.0e-40 168.3 100 81.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.0e-40 168.3 100 79.0
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.0e-40 168.3 100 79.0
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.0e-40 168.3 100 79.0
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.0e-40 168.3 101 81.2
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.9e-40 167.9 100 79.0
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.9e-40 167.9 99 79.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 8.6e-40 166.8 100 80.0
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-39 166.4 99 80.8
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.1e-39 166.4 100 77.0
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-39 166.4 98 74.5
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-39 165.6 100 78.0
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.5e-39 165.2 101 79.2
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.3e-39 164.9 97 80.4
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-38 162.9 88 86.4
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.6e-38 162.5 93 80.6
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.6e-38 161.4 97 75.3
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.8e-37 159.1 100 76.0
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 4.0e-37 157.9 100 71.0
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.2e-36 156.4 98 73.5
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.2e-36 156.4 98 74.5
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 3.4e-36 154.8 97 75.3
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.8e-36 154.1 94 76.6
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 7.1e-34 147.1 87 80.5
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 9.6e-31 136.7 88 72.7
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 2.0e-28 129.0 98 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.6e-28 128.6 96 60.4
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.2e-27 125.6 70 81.4
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.6e-25 119.4 94 57.4
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 6.0e-25 117.5 69 78.3
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 7.8e-25 117.1 98 54.1
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.3e-24 116.3 72 75.0
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.3e-24 116.3 72 75.0
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.3e-24 116.3 72 75.0
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.3e-24 116.3 72 75.0
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-24 115.5 64 81.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.3e-24 115.5 64 81.2
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 5.1e-24 114.4 71 74.6
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 2.5e-23 112.1 95 51.6
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 5.6e-23 110.9 66 75.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.6e-22 109.4 99 58.6
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 5.6e-15 84.3 96 39.6
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.8e-14 82.0 49 75.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.1e-13 78.6 44 81.8
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.1e-13 78.6 44 81.8
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 4.0e-13 78.2 47 74.5
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 6.5e-11 70.9 42 81.0
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 6.5e-11 70.9 92 38.0
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.4e-10 69.7 56 62.5
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 7.1e-10 67.4 55 61.8
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.5e-09 65.1 35 82.9
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 3.5e-09 65.1 35 82.9
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 6.0e-09 64.3 40 72.5


User provided reference genes

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