Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.0e-255 886.3 480 100.0
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 4.7e-208 728.0 480 81.9
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 5.5e-193 677.9 481 76.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.6e-192 676.4 482 74.5
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.1e-185 653.7 487 71.7
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.9e-178 629.0 480 70.2
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.2e-175 618.2 489 68.7
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 4.4e-166 588.6 513 62.8
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 7.5e-166 587.8 481 67.6
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.3e-162 576.2 541 60.3
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-158 563.5 495 63.4
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 7.6e-158 561.2 491 60.5
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 9.9e-158 560.8 495 60.4
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.3e-157 560.5 491 60.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.3e-157 560.5 491 60.5
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.2e-157 559.7 491 59.1
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.4e-156 556.2 491 60.7
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.1e-156 554.7 493 59.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.2e-155 553.9 491 59.1
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.3e-154 549.7 492 58.3
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.1e-151 539.3 489 57.5
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 6.8e-151 538.1 500 57.4
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.2e-150 537.3 496 58.1
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.5e-150 537.0 479 58.9
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 5.8e-150 535.0 468 59.4
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.9e-149 531.9 499 57.5
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 2.4e-148 529.6 494 59.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.5e-145 519.6 487 60.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.5e-145 519.6 491 55.8
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 4.3e-145 518.8 493 56.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.6e-145 518.5 495 55.6
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.3e-144 517.3 501 56.3
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.8e-144 516.2 496 57.1
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.6e-144 515.8 492 58.3
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 2.4e-143 513.1 492 58.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 4.0e-143 512.3 480 56.7
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.0e-143 511.1 497 56.3
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.0e-143 511.1 474 57.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.2e-142 510.8 491 54.0
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.2e-142 510.8 492 55.7
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.4e-142 508.8 499 55.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.4e-142 508.8 497 56.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 9.9e-142 507.7 424 61.8
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.8e-141 505.8 512 56.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.4e-141 505.0 488 55.3
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 5.4e-140 501.9 494 54.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.1e-139 500.0 488 55.3
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.1e-139 500.0 507 55.2
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.7e-139 499.6 493 56.6
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 7.9e-139 498.0 495 54.3
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 7.9e-139 498.0 493 55.0
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.9e-137 493.4 491 54.2
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 5.6e-137 491.9 495 53.7
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.6e-137 491.1 496 53.2
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.8e-136 489.6 491 53.2
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.6e-136 489.2 491 53.6
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.6e-136 489.2 485 59.4
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.2e-136 488.4 484 52.9
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.1e-135 487.6 495 53.5
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.1e-135 487.6 495 53.5
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-135 486.1 519 51.1
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 2.0e-134 483.4 500 54.0
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 5.8e-134 481.9 518 54.1
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 5.8e-134 481.9 491 53.0
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 5.8e-134 481.9 449 58.8
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.9e-134 481.1 482 52.5
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 4.9e-133 478.8 506 54.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.1e-132 477.6 501 53.1
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.1e-132 477.6 497 55.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.4e-132 477.2 506 53.8
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.2e-132 476.1 476 52.9
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.1e-131 473.4 447 55.5
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.7e-131 473.0 499 55.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 7.9e-131 471.5 490 52.4
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.3e-130 470.7 495 54.1
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.3e-130 470.7 491 52.5
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.3e-130 469.9 499 52.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.3e-130 469.9 465 53.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.9e-130 469.2 513 49.9
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.1e-130 468.8 495 51.7
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.6e-128 463.8 506 50.8
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 6.2e-128 461.8 506 50.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.1e-128 461.5 450 59.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.4e-127 459.9 496 53.4
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 7.6e-126 454.9 504 51.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 7.6e-126 454.9 492 54.7
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.0e-125 454.5 469 53.5
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.2e-125 453.4 484 51.7
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 8.4e-125 451.4 486 50.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.2e-124 449.5 430 57.2
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.2e-124 449.1 494 50.6
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.2e-124 449.1 492 52.6
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 5.5e-124 448.7 474 53.0
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 7.9e-123 444.9 486 50.0
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-122 444.1 497 53.9
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.8e-122 443.7 513 50.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 3.9e-122 442.6 499 52.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.9e-122 442.6 494 50.2
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.1e-122 442.2 493 49.9
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 8.7e-122 441.4 494 49.6
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 8.7e-122 441.4 493 51.1
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.5e-121 440.7 491 53.2
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.9e-121 440.3 500 51.0
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.3e-120 437.6 498 48.6
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.3e-120 437.6 437 58.1
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.7e-120 436.0 500 52.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 6.2e-120 435.3 500 50.0
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.1e-119 434.5 495 50.1
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.4e-119 434.1 497 49.7
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 3.1e-119 433.0 498 52.8
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.5e-118 430.6 512 48.0
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 4.5e-118 429.1 577 44.2
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 4.5e-118 429.1 453 54.1
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.4e-117 424.9 491 48.9
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.9e-116 423.7 460 55.2
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.9e-116 423.7 415 54.2
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-113 413.3 478 51.7
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 3.3e-113 412.9 491 49.7
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.3e-112 411.0 456 50.2
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.6e-112 410.6 494 50.4
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-111 407.9 492 50.4
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-111 407.5 536 45.0
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.1e-111 406.0 536 44.8
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 8.5e-109 398.3 551 45.2
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.5e-108 396.7 397 52.4
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 5.5e-108 395.6 455 53.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 6.1e-107 392.1 487 49.3
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 3.7e-104 382.9 454 51.3
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-102 376.7 479 46.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.2e-93 347.1 457 48.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.8e-90 337.4 403 52.6
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.3e-89 333.2 505 42.8
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.2e-86 324.7 497 42.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-84 318.2 413 45.5
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.2e-81 308.1 330 48.5
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 7.5e-81 305.4 223 64.1
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 6.3e-80 302.4 452 40.7
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 5.5e-76 289.3 466 36.5
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.4e-76 288.5 223 61.0
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 4.7e-75 286.2 308 57.1
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.7e-75 286.2 346 48.8
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 8.0e-75 285.4 192 72.4
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.4e-73 279.6 299 46.2
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.5e-73 278.9 414 42.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.2e-70 271.6 489 39.7
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.6e-70 271.2 345 42.0
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.8e-69 266.5 226 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 3.6e-67 260.0 297 45.1
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.3e-44 183.3 156 57.1
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.4e-42 178.3 141 60.3
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 4.1e-39 166.8 266 41.7
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 4.3e-36 156.8 300 33.7
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.4e-34 151.8 214 44.9
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.5e-33 148.3 251 32.7
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 5.4e-31 139.8 76 88.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 1.7e-29 134.8 197 33.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.5e-28 131.7 95 60.0
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.6e-22 111.7 228 41.7
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.1e-19 99.4 89 51.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.6e-17 94.4 113 54.0
TPR.G13518 Trifolium pratense HOM05D004208 ORTHO05D005156 8.4e-16 89.4 53 84.9
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.2e-14 85.5 270 25.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.3e-13 81.3 114 45.6
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.7e-13 79.7 60 60.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.7e-11 73.9 73 47.9


User provided reference genes

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