Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25912_v3 Cicer arietinum L. HOM05D005443 ORTHO05D009021 1.0e-108 396.7 201 100.0
arahy.Tifrunner.gnm1.ann1.0NFG0V Arachis hypogaea HOM05D005443 ORTHO05D009021 1.2e-48 197.2 145 66.9
Medtr0096s0020 Medicago truncatula HOM05D005443 ORTHO05D009021 3.5e-48 195.7 214 54.7
Glyma.06G293500 Glycine max HOM05D005443 ORTHO05D009021 2.3e-47 193.0 217 52.1
Sabra19G0111200 Salix brachista HOM05D005443 ORTHO05D009021 1.1e-46 190.7 260 42.3
TPR.G21753 Trifolium pratense HOM05D005443 ORTHO05D009021 1.9e-46 189.9 200 56.0
VMungo1127G1015 Vigna mungo HOM05D005443 ORTHO05D009021 4.0e-44 182.2 217 51.2
Lj3g0013365 Lotus japonicus HOM05D005443 ORTHO05D009021 6.8e-44 181.4 199 52.3
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 8.9e-44 181.0 303 38.3
Phvul.011G114600 Phaseolus vulgaris HOM05D005443 ORTHO05D009021 1.4e-41 173.7 217 49.3
arahy.Tifrunner.gnm1.ann1.Y6HWTN Arachis hypogaea HOM05D005443 ORTHO05D009021 3.5e-40 169.1 219 45.2
Sabra19G0112500 Salix brachista HOM05D005443 ORTHO05D009021 3.9e-39 165.6 167 54.5
Lalb_Chr19g0135291 Lupinus albus HOM05D005443 ORTHO05D009021 8.6e-39 164.5 212 48.1
CiPaw.04G125200 Carya illinoinensis HOM05D005443 ORTHO05D009021 1.6e-37 160.2 180 49.4
COL.COLO4_07390 Corchorus olitorius HOM05D005443 ORTHO05D009021 1.4e-36 157.1 117 59.8
CSS0011007 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 9.9e-35 151.0 220 41.4
CSS0037968 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 9.9e-35 151.0 220 41.4
RcHm_v2.0_Chr2g0126191 Rosa chinensis HOM05D005443 ORTHO05D009021 3.7e-34 149.1 200 43.5
FAN02G0200 Fragaria x ananassa HOM05D005443 ORTHO05D009021 4.9e-34 148.7 200 44.0
Eucgr.A01810 Eucalyptus grandis HOM05D005443 ORTHO05D009021 1.9e-33 146.7 200 43.0
Thecc.02G178000 Theobroma cacao HOM05D005443 ORTHO05D009021 2.4e-33 146.4 200 40.5
Manes.12G087400 Manihot esculenta HOM05D005443 ORTHO05D009021 2.1e-32 143.3 197 41.6
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 4.6e-32 142.1 217 39.6
Haze_13148 Corylus avellana HOM05D005443 ORTHO05D009021 4.6e-32 142.1 200 42.5
CANSAT78G0275 Cannabis sativa HOM05D005443 ORTHO05D009021 6.0e-32 141.7 200 42.5
Duzib052G1076 Durio zibethinus HOM05D005443 ORTHO05D009021 3.0e-31 139.4 200 38.5
TAR629G1996 Trochodendron aralioides HOM05D005443 ORTHO05D009021 5.1e-31 138.7 200 41.5
Aqoxy1G02515 Aquilegia oxysepala HOM05D005443 ORTHO05D009021 6.6e-31 138.3 185 42.2
Hma1.2p1_1201F.1_g266690 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 6.6e-31 138.3 198 39.9
Cfa014595 Carpinus fangiana HOM05D005443 ORTHO05D009021 8.6e-31 137.9 200 41.5
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 8.6e-31 137.9 200 40.5
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 7.3e-30 134.8 198 38.4
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 7.3e-30 134.8 198 38.4
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 9.5e-30 134.4 198 37.9
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 9.5e-30 134.4 198 38.9
Cpa.g.sc34.150 Carica papaya HOM05D005443 ORTHO05D009021 1.2e-29 134.0 221 37.6
Zm00001eb306570 Zea mays HOM05D005443 ORTHO05D009021 2.8e-29 132.9 125 51.2
PGSC0003DMG400018348 Solanum tuberosum HOM05D005443 ORTHO05D009021 3.6e-29 132.5 202 38.1
TWI75G0884 Tripterygium wilfordii HOM05D005443 ORTHO05D009021 6.2e-29 131.7 198 37.4
Prupe.3G135800 Prunus persica HOM05D005443 ORTHO05D009021 2.4e-28 129.8 232 37.1
CAN.G248.23 Capsicum annuum HOM05D005443 ORTHO05D009021 5.2e-28 128.6 194 39.2
FvH4_6g26140 Fragaria vesca HOM05D005443 ORTHO05D009021 6.8e-28 128.3 188 41.5
BcaB03g16866 Brassica carinata HOM05D005443 ORTHO05D009021 8.9e-28 127.9 200 38.0
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 1.2e-27 127.5 200 38.0
PGR042G2153 Punica granatum HOM05D005443 ORTHO05D009021 2.0e-27 126.7 194 40.2
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 2.0e-27 126.7 214 36.4
Ah.01g015220 Amaranthus hybridus HOM05D005443 ORTHO05D009021 2.6e-27 126.3 200 36.5
ClCG07G002990 Citrullus lanatus HOM05D000092 ORTHO05D009021 3.4e-27 125.9 200 38.0
Sc21g0002690 Simmondsia chinensis HOM05D005443 ORTHO05D009021 3.4e-27 125.9 202 38.1
AL3G53840 Arabidopsis lyrata HOM05D005443 ORTHO05D009021 7.6e-27 124.8 199 37.2
Prupe.3G135600 Prunus persica HOM05D005443 ORTHO05D009021 7.6e-27 124.8 201 38.3
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 1.3e-26 124.0 190 40.0
Migut.H01082 Erythranthe guttata HOM05D005443 ORTHO05D009021 1.7e-26 123.6 191 38.7
Potri.019G101100 Populus trichocarpa HOM05D005443 ORTHO05D009021 1.7e-26 123.6 107 58.9
Aa31LG8G17770 Aethionema arabicum HOM05D005443 ORTHO05D009021 3.8e-26 122.5 200 36.5
Cc05_g07040 Coffea canephora HOM05D005443 ORTHO05D009021 4.9e-26 122.1 200 35.5
AT2G20725 Arabidopsis thaliana HOM05D005443 ORTHO05D009021 6.4e-26 121.7 198 36.9
Cfa014602 Carpinus fangiana HOM05D005443 ORTHO05D009021 1.4e-25 120.6 190 41.1
Thhalv10002053m.g Eutrema salsugineum HOM05D005443 ORTHO05D009021 1.4e-25 120.6 224 33.5
Sopen07g028070 Solanum pennellii HOM05D005443 ORTHO05D009021 1.4e-25 120.6 188 38.8
Peaxi162Scf00132g00415 Petunia axillaris HOM05D005443 ORTHO05D009021 1.9e-25 120.2 185 40.5
A07p00040 Brassica napus HOM05D005443 ORTHO05D009021 2.4e-25 119.8 198 36.9
BraA07t27796Z Brassica rapa HOM05D005443 ORTHO05D009021 2.4e-25 119.8 198 36.9
Hma1.2p1_1201F.1_g266680 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 4.2e-25 119.0 187 37.4
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 5.4e-25 118.6 199 36.7
Carub.0003s3525 Capsella rubella HOM05D005443 ORTHO05D009021 9.2e-25 117.9 199 36.7
Oeu017969.1 Olea europaea HOM05D005443 ORTHO05D009021 9.2e-25 117.9 188 39.4
SalBow7G3189 Salvia bowleyana HOM05D005443 ORTHO05D009021 9.2e-25 117.9 194 36.6
SalBow7G4211 Salvia bowleyana HOM05D005443 ORTHO05D009021 9.2e-25 117.9 194 36.6
C07p00180 Brassica napus HOM05D005443 ORTHO05D009021 4.6e-24 115.5 201 35.3
Sed0001067 Sechium edule HOM05D005443 ORTHO05D009021 4.6e-24 115.5 188 38.8
BolC7t40469H Brassica oleracea HOM05D005443 ORTHO05D009021 6.0e-24 115.2 202 35.1
HanXRQChr17g0553531 Helianthus annuus HOM05D005443 ORTHO05D009021 7.8e-24 114.8 199 35.7
THA.LOC104814500 Tarenaya hassleriana HOM05D005443 ORTHO05D009021 1.0e-23 114.4 196 35.2
Sp3g33980 Schrenkiella parvula HOM05D005443 ORTHO05D009021 3.0e-23 112.8 224 31.7
Dinv23652 Davidia involucrata HOM05D005443 ORTHO05D009021 1.1e-22 110.9 179 40.2
MELO3C024064.2 Cucumis melo HOM05D005443 ORTHO05D009021 4.3e-22 109.0 188 38.3
Atru.chr6.3005 Acer truncatum HOM05D005443 ORTHO05D009021 9.6e-22 107.8 108 56.5
Lsat_1_v5_gn_8_133320 Lactuca sativa HOM05D005443 ORTHO05D009021 2.1e-21 106.7 195 34.9
Os07g0457550 Oryza sativa ssp. japonica HOM05D005443 ORTHO05D009021 2.8e-21 106.3 197 34.5
SGA_v2.0_scaffold109G31118 Striga asiatica HOM05D005443 ORTHO05D009021 4.7e-21 105.5 200 34.5
HPP92_025995 Vanilla planifolia HOM05D005443 ORTHO05D009021 1.4e-20 104.0 200 35.0
Nn1g04052 Nelumbo nucifera HOM05D005443 ORTHO05D009021 2.4e-20 103.2 107 54.2
MSTRG.12821 Avicennia marina HOM05D005443 ORTHO05D009021 4.0e-20 102.4 80 62.5
EL10Ac9g20753 Beta vulgaris HOM05D005443 ORTHO05D009021 4.0e-20 102.4 83 57.8
unitig_62.g23169 Utricularia gibba HOM05D005443 ORTHO05D009021 7.6e-19 98.2 184 34.2
CARHR111400 Cardamine hirsuta HOM05D005443 ORTHO05D009021 1.3e-18 97.4 83 56.6
BcaB08g34938 Brassica carinata HOM05D005443 ORTHO05D011625 1.1e-17 94.4 171 36.8
BcaC06g36763 Brassica carinata HOM05D005443 ORTHO05D009021 2.4e-17 93.2 83 54.2
BcaC06g36764 Brassica carinata HOM05D005443 ORTHO05D009021 2.4e-17 93.2 83 54.2
Gohir.D10G119100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 4.6e-16 89.0 71 57.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 6.2e-13 78.6 212 29.7
Pp3c3_11680 Physcomitrium patens HOM05D005443 ORTHO05D009021 9.0e-12 74.7 112 41.1
EL10Ac9g20752 Beta vulgaris HOM05D005443 ORTHO05D009021 5.8e-11 72.0 49 65.3
Atru.chr2.3463 Acer truncatum HOM05D005443 ORTHO05D009021 6.4e-10 68.6 49 59.2
PSO675G8511 Papaver somniferum HOM05D005443 ORTHO05D009021 8.4e-10 68.2 183 27.9
Glyma.12G111866 Glycine max HOM05D005443 ORTHO05D009021 1.9e-09 67.0 41 78.0
QL08p038456 Quercus lobata HOM05D005443 ORTHO05D009021 2.4e-09 66.6 49 59.2
DCAR_016518 Daucus carota HOM05D005443 ORTHO05D009021 7.1e-09 65.1 71 52.1
Atru.chr2.3477 Acer truncatum HOM05D005443 ORTHO05D009021 9.3e-09 64.7 76 51.3
Prupe.4G275100 Prunus persica HOM05D005443 ORTHO05D009021 2.1e-08 63.5 82 45.1
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 2.7e-08 63.2 137 33.6
Medtr0058s0010 Medicago truncatula HOM05D005443 ORTHO05D011625 1.0e-07 61.2 37 70.3
Mapoly0061s0039 Marchantia polymorpha HOM05D005443 ORTHO05D009021 1.3e-07 60.8 201 25.4
Nitab4.5_0000512g0150 Nicotiana tabacum HOM05D005443 ORTHO05D009021 1.3e-07 60.8 69 40.6
Manes.12G087300 Manihot esculenta HOM05D005443 ORTHO05D011625 1.8e-07 60.5 39 71.8
AagrBONN_evm.TU.Sc2ySwM_228.5557 Anthoceros agrestis HOM05D005443 ORTHO05D009021 2.3e-07 60.1 218 25.7
CsaV3_7G024480 Cucumis sativus L. HOM05D005443 ORTHO05D009021 2.3e-07 60.1 56 48.2
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 3.0e-07 59.7 99 32.3
Nitab4.5_0002526g0090 Nicotiana tabacum HOM05D005443 ORTHO05D009021 3.9e-07 59.3 60 45.0
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 3.9e-07 59.3 95 36.8
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 3.9e-07 59.3 115 34.8
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 5.1e-07 58.9 117 33.3
COL.COLO4_07391 Corchorus olitorius HOM05D005443 ORTHO05D011625 5.1e-07 58.9 40 72.5
ATR0680G174 Amborella trichopoda HOM05D005443 ORTHO05D009021 6.7e-07 58.5 49 51.0
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 6.7e-07 58.5 85 41.2
Gohir.A03G157250 Gossypium hirsutum HOM05D005443 ORTHO05D011625 6.7e-07 58.5 38 71.1
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 6.7e-07 58.5 97 37.1
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 8.7e-07 58.2 119 32.8
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 8.7e-07 58.2 119 35.3
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 8.7e-07 58.2 85 41.2
Hma1.2p1_1201F.1_g266620 Hydrangea macrophylla HOM05D005443 ORTHO05D011625 1.1e-06 57.8 38 68.4
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 1.1e-06 57.8 108 38.0
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 1.1e-06 57.8 136 29.4
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 1.5e-06 57.4 85 40.0
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 1.5e-06 57.4 119 34.5
HanXRQChr06g0171351 Helianthus annuus HOM05D005443 ORTHO05D011625 1.5e-06 57.4 40 67.5
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 1.5e-06 57.4 83 36.1
Phvul.011G114500 Phaseolus vulgaris HOM05D005443 ORTHO05D011625 1.5e-06 57.4 40 70.0
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 1.9e-06 57.0 119 35.3
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 1.9e-06 57.0 119 35.3
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 1.9e-06 57.0 119 35.3
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 1.9e-06 57.0 114 32.5
Gohir.D02G180550 Gossypium hirsutum HOM05D005443 ORTHO05D011625 1.9e-06 57.0 38 68.4
TAR629G1945 Trochodendron aralioides HOM05D005443 ORTHO05D011625 1.9e-06 57.0 38 71.1
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 2.5e-06 56.6 96 34.4
Migut.H01083 Erythranthe guttata HOM05D005443 ORTHO05D011625 2.5e-06 56.6 40 75.0
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 2.5e-06 56.6 97 35.1
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 2.5e-06 56.6 97 35.1
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 2.5e-06 56.6 116 31.9
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 3.3e-06 56.2 85 40.0
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 3.3e-06 56.2 119 34.5
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 3.3e-06 56.2 119 34.5
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 3.3e-06 56.2 119 34.5
Glyma.12G111932 Glycine max HOM05D005443 ORTHO05D011625 3.3e-06 56.2 40 67.5
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 3.3e-06 56.2 119 34.5
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 4.3e-06 55.8 103 33.0
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 4.3e-06 55.8 119 34.5
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 4.3e-06 55.8 119 34.5
Hma1.2p1_1201F.1_g266670 Hydrangea macrophylla HOM05D005443 ORTHO05D011625 4.3e-06 55.8 38 65.8
Hma1.2p1_3039F.1_g332015 Hydrangea macrophylla HOM05D005443 ORTHO05D011625 4.3e-06 55.8 38 65.8
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 5.6e-06 55.5 83 36.1
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 5.6e-06 55.5 83 34.9
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 5.6e-06 55.5 85 34.1
Lsat_1_v5_gn_3_38100 Lactuca sativa HOM05D005443 ORTHO05D011625 7.4e-06 55.1 38 65.8
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 7.4e-06 55.1 83 36.1
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 7.4e-06 55.1 96 34.4
PRCOL_00002500 Prasinoderma coloniale HOM05D004646 ORTHO05D005829 7.4e-06 55.1 72 41.7
Glyma.06G293450 Glycine max HOM05D005443 ORTHO05D011625 9.6e-06 54.7 40 65.0
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 9.6e-06 54.7 83 34.9
Hund07945 Selenicereus undatus HOM05D005443 ORTHO05D009021 9.6e-06 54.7 38 57.9


User provided reference genes

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