Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25901_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 3.3e-104 381.7 195 100.0
Lj1g0003847 Lotus japonicus HOM05D000425 ORTHO05D000373 3.9e-52 208.8 202 61.9
Psat3g137880 Pisum sativum HOM05D000425 ORTHO05D000373 3.9e-52 208.8 245 50.6
Medtr7g062430 Medicago truncatula HOM05D000425 ORTHO05D000373 5.6e-51 204.9 245 53.1
TPR.G1674 Trifolium pratense HOM05D000425 ORTHO05D000373 3.7e-47 192.2 267 47.9
Lalb_Chr03g0042381 Lupinus albus HOM05D000425 ORTHO05D000373 2.0e-40 169.9 247 44.9
arahy.Tifrunner.gnm1.ann1.JR6N4B Arachis hypogaea HOM05D000425 ORTHO05D000373 3.8e-39 165.6 205 53.7
Phvul.008G118800 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 3.5e-37 159.1 233 44.2
VMungo1383G3161 Vigna mungo HOM05D000425 ORTHO05D000373 3.9e-36 155.6 237 43.5
Cfa017346 Carpinus fangiana HOM05D000425 ORTHO05D000373 2.4e-30 136.3 242 39.7
arahy.Tifrunner.gnm1.ann1.E79XBB Arachis hypogaea HOM05D000425 ORTHO05D000373 7.1e-30 134.8 179 52.5
Thecc.05G036300 Theobroma cacao HOM05D000425 ORTHO05D000373 1.7e-28 130.2 243 42.0
Gohir.D04G122100 Gossypium hirsutum HOM05D000425 ORTHO05D000373 9.6e-27 124.4 239 39.7
Gorai.012G105000 Gossypium raimondii HOM05D000425 ORTHO05D000373 9.6e-27 124.4 239 39.7
Gohir.A04G083400 Gossypium hirsutum HOM05D000425 ORTHO05D000373 4.8e-26 122.1 239 39.3
Duzib093G1924 Durio zibethinus HOM05D000425 ORTHO05D000373 8.1e-26 121.3 242 39.7
TAR633G1710 Trochodendron aralioides HOM05D000425 ORTHO05D000373 1.1e-25 120.9 245 39.6
Potri.016G100300 Populus trichocarpa HOM05D000425 ORTHO05D000373 1.8e-25 120.2 244 37.3
CiPaw.10G146900 Carya illinoinensis HOM05D000425 ORTHO05D000373 2.4e-25 119.8 243 35.4
Haze_20823 Corylus avellana HOM05D000425 ORTHO05D000373 2.6e-24 116.3 232 37.1
Dinv37152 Davidia involucrata HOM05D000425 ORTHO05D000373 2.6e-24 116.3 241 37.8
QL07p048897 Quercus lobata HOM05D000425 ORTHO05D000373 2.6e-24 116.3 246 36.2
Actinidia26483 Actinidia chinensis HOM05D000425 ORTHO05D000373 4.5e-24 115.5 249 36.1
Manes.08G081200 Manihot esculenta HOM05D000425 ORTHO05D000373 5.8e-24 115.2 243 37.4
TWI77G0985 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 1.1e-22 110.9 242 35.5
Eucgr.K03109 Eucalyptus grandis HOM05D000425 ORTHO05D000373 1.4e-22 110.5 244 37.7
Prupe.6G258200 Prunus persica HOM05D000425 ORTHO05D000373 5.4e-22 108.6 246 41.5
MD12G1144700 Malus domestica HOM05D000425 ORTHO05D000373 4.6e-21 105.5 242 39.3
Nn2g11172 Nelumbo nucifera HOM05D000425 ORTHO05D000373 6.0e-21 105.1 243 36.2
Nitab4.5_0000770g0160 Nicotiana tabacum HOM05D000425 ORTHO05D000373 1.0e-20 104.4 244 35.2
PGR004G0713 Punica granatum HOM05D000425 ORTHO05D000373 3.0e-20 102.8 253 35.6
Nitab4.5_0005100g0060 Nicotiana tabacum HOM05D000425 ORTHO05D000373 5.1e-20 102.1 243 35.0
Solyc10g084830.2 Solanum lycopersicum HOM05D000425 ORTHO05D000373 8.7e-20 101.3 237 35.0
Sopen10g034270 Solanum pennellii HOM05D000425 ORTHO05D000373 1.1e-19 100.9 239 36.0
THA.LOC104816261 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 1.5e-19 100.5 247 35.2
PGSC0003DMG400011068 Solanum tuberosum HOM05D000425 ORTHO05D000373 5.6e-19 98.6 237 34.6
Peaxi162Scf00094g01012 Petunia axillaris HOM05D000425 ORTHO05D000373 1.6e-18 97.1 244 34.8
Aa31LG1G22550 Aethionema arabicum HOM05D000425 ORTHO05D000373 3.7e-18 95.9 260 35.4
RcHm_v2.0_Chr3g0466251 Rosa chinensis HOM05D000425 ORTHO05D000373 3.7e-18 95.9 248 34.7
Ciclev10011256m.g Citrus clementina HOM05D000425 ORTHO05D000373 1.1e-17 94.4 251 33.1
Rhsim05G0194600 Rhododendron simsii HOM05D000080 ORTHO05D000053 1.4e-17 94.0 245 35.5
Migut.J00310 Erythranthe guttata HOM05D000425 ORTHO05D000373 4.0e-17 92.4 243 32.9
CAN.G324.14 Capsicum annuum HOM05D000425 ORTHO05D000373 9.0e-17 91.3 249 33.7
PSO339G5781 Papaver somniferum HOM05D000425 ORTHO05D000373 1.5e-16 90.5 235 32.8
Atru.chr8.2006 Acer truncatum HOM05D000425 ORTHO05D000373 2.6e-16 89.7 226 33.2
CSS0032834 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 3.4e-16 89.4 246 32.1
PSO063G2924 Papaver somniferum HOM05D000425 ORTHO05D000373 5.8e-16 88.6 235 32.3
AL6G11410 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 7.6e-16 88.2 254 33.5
Lj2A91T55 Lonicera japonica HOM05D000425 ORTHO05D000373 7.6e-16 88.2 246 33.3
COL.COLO4_14770 Corchorus olitorius HOM05D000425 ORTHO05D000373 9.9e-16 87.8 247 34.0
CARHR211180 Cardamine hirsuta HOM05D000425 ORTHO05D000373 3.8e-15 85.9 257 32.7
THA.LOC104816260 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 1.4e-14 84.0 250 30.8
A10p33430 Brassica napus HOM05D000425 ORTHO05D000373 2.4e-14 83.2 254 32.3
BraA10t45373Z Brassica rapa HOM05D000425 ORTHO05D000373 2.4e-14 83.2 254 32.3
Carub.0006s0102 Capsella rubella HOM05D000425 ORTHO05D000373 5.5e-14 82.0 259 32.4
Thhalv10013167m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 7.1e-14 81.6 261 31.4
C09p74330 Brassica napus HOM05D000425 ORTHO05D000373 1.2e-13 80.9 253 31.2
FvH4_6g13370 Fragaria vesca HOM05D000425 ORTHO05D000373 1.2e-13 80.9 254 33.5
BolC9t60167H Brassica oleracea HOM05D000425 ORTHO05D000373 2.1e-13 80.1 253 31.6
vmacro20174 Vaccinium macrocarpon HOM05D000425 ORTHO05D000373 2.1e-13 80.1 169 39.1
DCAR_012109 Daucus carota HOM05D000425 ORTHO05D000373 7.9e-13 78.2 235 31.1
Lsat_1_v5_gn_9_33501 Lactuca sativa HOM05D000425 ORTHO05D000373 3.9e-12 75.9 251 30.3
AT5G02180 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 8.7e-12 74.7 258 31.0
Nn2g11557 Nelumbo nucifera HOM05D000425 ORTHO05D000373 8.7e-12 74.7 242 29.8
Sp6g40260 Schrenkiella parvula HOM05D000425 ORTHO05D000373 1.1e-11 74.3 255 30.2
ATR0559G141 Amborella trichopoda HOM05D000425 ORTHO05D000373 2.5e-11 73.2 243 29.6
HanXRQChr17g0535941 Helianthus annuus HOM05D000425 ORTHO05D000373 4.3e-11 72.4 246 30.5
FAN02G1306 Fragaria x ananassa HOM05D000425 ORTHO05D000373 7.4e-11 71.6 244 32.8
Gorai.006G171300 Gossypium raimondii HOM05D000425 ORTHO05D000373 7.4e-11 71.6 237 29.5
Medtr7g062410 Medicago truncatula HOM05D000425 ORTHO05D000373 7.4e-11 71.6 125 39.2
FAN06G3886 Fragaria x ananassa HOM05D000425 ORTHO05D000373 9.6e-11 71.2 210 32.4
Aa31LG3G1830 Aethionema arabicum HOM05D000425 ORTHO05D000373 1.3e-10 70.9 237 31.2
Gohir.D09G150050 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.3e-10 70.9 236 30.1
FAN09G0589 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.6e-10 70.5 244 32.8
HPP92_022587 Vanilla planifolia HOM05D000425 ORTHO05D000373 1.6e-10 70.5 248 29.4
FAN05G3060 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.1e-10 70.1 246 32.5
FAN14G1970 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.1e-10 70.1 244 32.4
A03p00570 Brassica napus HOM05D000425 ORTHO05D000373 2.8e-10 69.7 242 28.9
Sp3g07720 Schrenkiella parvula HOM05D000425 ORTHO05D000373 3.7e-10 69.3 236 31.8
MD01G1104600 Malus domestica HOM05D000425 ORTHO05D000373 6.2e-10 68.6 237 29.1
FAN01G1533 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.1e-09 67.8 210 33.8
AT5G02170 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 1.4e-09 67.4 237 27.8
CARHR083700 Cardamine hirsuta HOM05D000425 ORTHO05D000373 1.4e-09 67.4 245 31.4
ATR0680G312 Amborella trichopoda HOM05D000425 ORTHO05D000373 3.1e-09 66.2 240 27.5
RcHm_v2.0_Chr1g0362811 Rosa chinensis HOM05D000425 ORTHO05D000373 3.1e-09 66.2 237 27.0
Aqoxy1G00896 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 4.0e-09 65.9 250 31.6
Haze_16848 Corylus avellana HOM05D000425 ORTHO05D000373 4.0e-09 65.9 214 31.3
Dinv36404 Davidia involucrata HOM05D000425 ORTHO05D000373 5.3e-09 65.5 212 28.3
FAN10G2300 Fragaria x ananassa HOM05D000425 ORTHO05D000373 5.3e-09 65.5 203 34.5
CDE11G0827 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 6.9e-09 65.1 213 27.7
Potri.008G036300 Populus trichocarpa HOM05D000425 ORTHO05D000373 6.9e-09 65.1 206 29.1
Migut.F01722 Erythranthe guttata HOM05D000425 ORTHO05D000373 9.0e-09 64.7 249 27.7
Glyma.10G208800 Glycine max HOM05D000425 ORTHO05D000373 9.0e-09 64.7 213 28.6
Lj5g0024381 Lotus japonicus HOM05D000425 ORTHO05D000373 9.0e-09 64.7 210 28.6
Lalb_Chr01g0022571 Lupinus albus HOM05D000425 ORTHO05D000373 1.2e-08 64.3 159 34.0
Actinidia11268 Actinidia chinensis HOM05D000425 ORTHO05D000373 1.5e-08 63.9 132 40.2
Eucgr.J01066 Eucalyptus grandis HOM05D000425 ORTHO05D000373 1.5e-08 63.9 198 27.8
Manes.07G095400 Manihot esculenta HOM05D000425 ORTHO05D000373 1.5e-08 63.9 215 30.2
Medtr1g094620 Medicago truncatula HOM05D000425 ORTHO05D000373 2.0e-08 63.5 207 27.5
C03p43670 Brassica napus HOM05D000425 ORTHO05D000373 2.6e-08 63.2 232 30.6
CDE05G0235 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 2.6e-08 63.2 240 26.7
Thhalv10020500m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 3.4e-08 62.8 239 29.3
FAN06G2715 Fragaria x ananassa HOM05D000425 ORTHO05D000373 3.4e-08 62.8 241 27.0
RhsimUnG0187000 Rhododendron simsii HOM05D000425 ORTHO05D000373 3.4e-08 62.8 238 29.4
BolC3t16635H Brassica oleracea HOM05D000425 ORTHO05D000373 4.5e-08 62.4 232 31.0
Ciclev10031131m.g Citrus clementina HOM05D000425 ORTHO05D000373 4.5e-08 62.4 197 28.4
Gohir.A05G294300 Gossypium hirsutum HOM05D000425 ORTHO05D000373 4.5e-08 62.4 248 28.6
Gohir.D05G294800 Gossypium hirsutum HOM05D000425 ORTHO05D000373 4.5e-08 62.4 248 28.6
Gorai.009G311500 Gossypium raimondii HOM05D000425 ORTHO05D000373 4.5e-08 62.4 248 28.6
Nn2g13759 Nelumbo nucifera HOM05D000425 ORTHO05D000373 4.5e-08 62.4 243 28.0
Aqoxy2G01796 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 5.8e-08 62.0 251 26.7
HanXRQChr07g0195041 Helianthus annuus HOM05D000425 ORTHO05D000373 7.6e-08 61.6 236 28.4
MD07G1171200 Malus domestica HOM05D000425 ORTHO05D000373 7.6e-08 61.6 238 29.8
GSVIVG01016234001 Vitis vinifera HOM05D000425 ORTHO05D000373 1.0e-07 61.2 202 28.2
BcaB04g18533 Brassica carinata HOM05D000425 ORTHO05D003096 1.3e-07 60.8 238 30.3
QL08p054920 Quercus lobata HOM05D000425 ORTHO05D000373 1.7e-07 60.5 194 28.4
SMO165G0088 Selaginella moellendorffii HOM05D000425 ORTHO05D000373 1.7e-07 60.5 194 29.9
AT3G09330 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 2.2e-07 60.1 236 30.5
Duzib106G1167 Durio zibethinus HOM05D000425 ORTHO05D000373 2.2e-07 60.1 239 26.8
Potri.010G226000 Populus trichocarpa HOM05D000425 ORTHO05D000373 2.2e-07 60.1 219 26.9
PGSC0003DMG400007424 Solanum tuberosum HOM05D000425 ORTHO05D000373 2.2e-07 60.1 244 27.0
Aqoxy1G01173_Aqoxy1G01174 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 2.9e-07 59.7 252 27.4
BcaB01g06065 Brassica carinata HOM05D000425 ORTHO05D000373 2.9e-07 59.7 200 29.0
CSS0006346 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 2.9e-07 59.7 202 29.2
CsaV3_5G036080 Cucumis sativus L. HOM05D000425 ORTHO05D000373 2.9e-07 59.7 209 29.7
Lalb_Chr02g0152151 Lupinus albus HOM05D000425 ORTHO05D000373 2.9e-07 59.7 233 27.0
Thecc.10G080300 Theobroma cacao HOM05D000425 ORTHO05D000373 2.9e-07 59.7 247 28.3
AL6G11400 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 3.8e-07 59.3 238 27.3
arahy.Tifrunner.gnm1.ann1.BC87BJ Arachis hypogaea HOM05D000425 ORTHO05D000373 3.8e-07 59.3 197 28.4
FAN03G1171 Fragaria x ananassa HOM05D000425 ORTHO05D000373 3.8e-07 59.3 200 31.5
HanXRQChr14g0456651 Helianthus annuus HOM05D000425 ORTHO05D000373 3.8e-07 59.3 249 29.3
Lsat_1_v5_gn_2_112901 Lactuca sativa HOM05D000425 ORTHO05D000373 3.8e-07 59.3 241 29.0
arahy.Tifrunner.gnm1.ann1.N0MV1J Arachis hypogaea HOM05D000425 ORTHO05D000373 4.9e-07 58.9 195 27.7
BraA03t12774Z Brassica rapa HOM05D000425 ORTHO05D000373 4.9e-07 58.9 223 29.1
Hma1.2p1_0438F.1_g153100 Hydrangea macrophylla HOM05D000425 ORTHO05D000373 4.9e-07 58.9 195 27.7
Lalb_Chr21g0313741 Lupinus albus HOM05D000425 ORTHO05D000373 4.9e-07 58.9 233 28.3
Manes.10G049300 Manihot esculenta HOM05D000425 ORTHO05D000373 4.9e-07 58.9 237 30.4
PGR044G0567 Punica granatum HOM05D000425 ORTHO05D000373 4.9e-07 58.9 248 28.2
Duzib128G1117 Durio zibethinus HOM05D000425 ORTHO05D000373 6.5e-07 58.5 248 26.6
Oeu015082.1 Olea europaea HOM05D000425 ORTHO05D000373 6.5e-07 58.5 242 28.1
Duzib114G0694 Durio zibethinus HOM05D000425 ORTHO05D000373 8.4e-07 58.2 198 27.8
BcaC01g04229 Brassica carinata HOM05D000425 ORTHO05D000373 1.1e-06 57.8 239 30.1
FvH4_7g18870 Fragaria vesca HOM05D000425 ORTHO05D000373 1.1e-06 57.8 243 26.7
HanXRQChr08g0218621 Helianthus annuus HOM05D000425 ORTHO05D000373 1.1e-06 57.8 203 28.6
Prupe.2G209900 Prunus persica HOM05D000425 ORTHO05D000373 1.1e-06 57.8 247 26.7
unitig_37.g12314 Utricularia gibba HOM05D000425 ORTHO05D000373 1.1e-06 57.8 242 26.0
Sopen03g015310 Solanum pennellii HOM05D000425 ORTHO05D000373 1.4e-06 57.4 199 30.2
SGA_v2.0_scaffold75G24962 Striga asiatica HOM05D000425 ORTHO05D000373 1.4e-06 57.4 175 28.0
Actinidia32438 Actinidia chinensis HOM05D000425 ORTHO05D000373 1.9e-06 57.0 211 28.0
AT3G09340 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 1.9e-06 57.0 236 28.8
PSO063G3625 Papaver somniferum HOM05D000425 ORTHO05D000373 1.9e-06 57.0 203 28.1
Phvul.007G097200 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 1.9e-06 57.0 235 26.0
AL3G20490 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 2.5e-06 56.6 186 29.0
Ca_10549_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 2.5e-06 56.6 207 27.1
Psat6g181960 Pisum sativum HOM05D000425 ORTHO05D000373 2.5e-06 56.6 228 26.3
Sed0017499 Sechium edule HOM05D000425 ORTHO05D000373 2.5e-06 56.6 217 28.1
PGSC0003DMG400013962 Solanum tuberosum HOM05D000425 ORTHO05D000373 2.5e-06 56.6 199 29.6
CAN.G321.40 Capsicum annuum HOM05D000425 ORTHO05D000373 3.2e-06 56.2 197 29.9
A03p36020 Brassica napus HOM05D000425 ORTHO05D000373 4.2e-06 55.8 237 29.1
DCAR_006422 Daucus carota HOM05D001165 ORTHO05D001347 4.2e-06 55.8 202 27.7
FAN10G2737 Fragaria x ananassa HOM05D000425 ORTHO05D000373 4.2e-06 55.8 203 31.5
PSO339G4452 Papaver somniferum HOM05D000425 ORTHO05D000373 4.2e-06 55.8 203 28.1
CANSAT56G4283 Cannabis sativa HOM05D000425 ORTHO05D000373 5.5e-06 55.5 238 28.2
Glyma.20G181900 Glycine max HOM05D000425 ORTHO05D000373 5.5e-06 55.5 238 26.1
MBI05_g29686_MAGBIO Magnolia biondii HOM05D000425 ORTHO05D003392 5.5e-06 55.5 33 75.8
Nitab4.5_0004385g0030 Nicotiana tabacum HOM05D000425 ORTHO05D000373 5.5e-06 55.5 214 29.0
BcaB01g00156 Brassica carinata HOM05D000425 ORTHO05D000373 7.1e-06 55.1 221 22.6
Rhsim03G0117100 Rhododendron simsii HOM05D000425 ORTHO05D000373 7.1e-06 55.1 37 67.6
Solyc03g063030.4 Solanum lycopersicum HOM05D000425 ORTHO05D000373 7.1e-06 55.1 199 29.6
TAR633G2021 Trochodendron aralioides HOM05D000425 ORTHO05D000373 7.1e-06 55.1 245 25.3
Nitab4.5_0002233g0010 Nicotiana tabacum HOM05D000425 ORTHO05D000373 9.3e-06 54.7 196 28.6
TWI38G1268 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 9.3e-06 54.7 245 25.3
vmacro07124 Vaccinium macrocarpon HOM05D000425 ORTHO05D000373 9.3e-06 54.7 254 27.2


User provided reference genes

Program Settings