Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 4129.3 2152 100.0
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 3688.7 2164 89.1
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 3673.2 2166 89.2
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 3426.7 2165 82.6
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 3358.9 2164 81.2
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 3357.4 2166 81.7
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 3314.6 2161 79.6
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 3160.9 2163 77.9
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 2999.5 2038 77.2
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2918.3 2083 74.3
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2597.0 2170 64.6
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2498.0 2177 63.0
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2486.8 2178 62.4
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2484.1 2170 63.8
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2477.6 2172 64.0
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2474.9 2173 64.0
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2459.5 2167 63.2
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2458.7 2167 62.7
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2454.9 2176 61.9
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2452.9 2189 62.4
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2446.0 2187 62.5
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2427.1 2180 61.6
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2424.4 2202 61.0
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2424.0 2264 60.5
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2422.1 2175 61.4
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2411.3 2196 60.2
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2372.8 2171 61.7
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2369.3 2176 60.7
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2326.6 2201 57.7
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2320.4 2188 59.5
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2268.4 2168 58.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2268.0 2173 57.8
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2260.7 2172 58.1
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2231.4 2172 57.0
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2207.6 2179 57.1
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2188.7 1952 61.2
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2164.4 2181 56.3
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2160.6 1984 58.3
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2151.7 2180 55.0
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2151.3 2177 56.0
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2150.2 2190 55.9
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2138.6 2204 55.2
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2103.2 2249 54.2
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2102.0 2190 55.8
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2099.7 2204 54.3
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2095.9 2179 55.9
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2090.5 2165 55.8
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2072.0 2193 53.2
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 2057.3 2088 54.9
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 2028.4 2171 54.3
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2004.6 1549 71.0
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1999.9 2170 53.2
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1996.9 2151 54.5
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1978.0 2279 50.9
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1969.1 2126 51.7
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1942.9 1290 79.0
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1927.1 2182 50.8
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1908.6 2156 52.0
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1907.1 1906 55.8
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1895.2 1676 61.2
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1885.5 1888 57.0
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1865.5 2180 51.2
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1859.0 2171 51.4
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1848.2 1890 56.5
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1832.4 2091 51.1
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1828.9 2131 50.5
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1820.4 2261 48.9
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1771.9 2029 51.8
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1762.7 1962 53.5
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1761.5 1990 52.4
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1717.2 1832 52.6
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1593.9 1541 56.2
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1578.9 1975 45.6
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1551.6 1755 51.8
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1521.5 1130 72.0
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1490.3 1677 52.5
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1431.8 1692 50.7
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1407.1 1694 49.9
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1406.3 1791 45.1
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1405.6 1116 65.2
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1385.2 1706 50.3
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1351.3 2292 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1226.1 1946 39.5
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1193.3 2247 37.5
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 7.7e-303 1045.0 966 59.1
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 9.8e-298 1028.1 1021 58.4
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 2.0e-290 1003.8 1026 53.7
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 1.7e-265 921.0 506 92.1
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.7e-262 911.0 969 51.7
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 3.3e-261 906.7 1121 50.6
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 3.0e-254 883.6 1385 39.6
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 2.6e-218 764.2 2524 29.2
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 1.3e-217 761.9 509 76.0
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 2.6e-210 737.6 1460 33.4
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.0e-209 735.7 901 46.8
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 2.3e-198 698.0 644 57.6
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 2.7e-162 578.2 394 74.1
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 6.8e-150 537.0 415 66.7
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 2.4e-123 448.7 563 52.4
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 2.2e-116 425.6 354 64.4
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.6e-114 419.5 342 65.8
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 9.7e-112 410.2 407 54.8
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 2.8e-111 408.7 407 54.3
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 6.9e-110 404.1 304 90.5
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 1.2e-101 376.7 227 82.8
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 3.0e-97 362.1 216 81.5
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 1.2e-93 350.1 228 76.8
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 2.6e-88 332.4 182 87.4
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.3e-88 332.0 338 55.9
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.1e-78 300.4 563 37.7
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 5.0e-76 291.6 346 58.4
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 5.2e-65 255.0 380 56.1
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 2.8e-63 249.2 128 93.0
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 3.5e-61 242.3 286 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.7e-55 223.4 203 55.7
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 6.0e-53 214.9 166 64.5
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 2.2e-47 196.4 225 52.4
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 2.4e-46 193.0 163 68.7
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.7e-44 186.8 163 66.9
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-41 177.2 130 70.8
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.8e-41 176.8 130 70.8
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.0e-40 173.3 133 60.2
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 6.6e-36 158.3 142 66.2
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 3.3e-35 156.0 163 65.0
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 4.7e-34 152.1 334 46.7
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-33 150.6 73 91.8
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-33 150.6 73 91.8
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 8.4e-31 141.4 151 55.0
Psat7g121640 Pisum sativum HOM05D004910 ORTHO05D030483 3.9e-28 132.5 114 67.5
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 8.7e-28 131.3 64 92.2
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.6e-26 127.1 95 65.3
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 8.1e-26 124.8 134 51.5
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.0e-24 120.2 376 42.6
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 7.6e-24 118.2 85 69.4
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.2e-21 110.9 179 45.8
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 5.6e-19 102.1 65 73.8
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.4e-17 96.7 57 80.7
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 3.1e-17 96.3 53 86.8
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.6e-16 93.2 73 68.5
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 5.8e-16 92.0 79 62.0
Psat0s2416g0040 Pisum sativum HOM05D063655 ORTHO05D328616 7.4e-11 75.1 102 52.0
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 2.1e-10 73.6 55 70.9
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 3.7e-10 72.8 51 64.7
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 3.7e-10 72.8 64 64.1
Psat0s4644g0040 Pisum sativum HOM05D063655 ORTHO05D030483 8.1e-10 71.6 102 51.0
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 2.4e-09 70.1 55 63.6
Psat0s2415g0080 Pisum sativum HOM05D036449 ORTHO05D327484 2.6e-08 66.6 100 48.0
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 7.6e-08 65.1 45 77.8
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 3.8e-07 62.8 49 69.4
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 5.5e-06 58.9 50 64.0


User provided reference genes

Program Settings