Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 6.3e-111 404.1 197 100.0
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.9e-108 395.2 197 98.0
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 4.1e-102 374.8 221 84.6
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 8.6e-100 367.1 221 84.2
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.4e-94 349.0 221 79.6
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 4.1e-94 348.2 221 78.3
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 9.5e-91 337.0 221 75.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.1e-90 335.9 247 70.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.1e-89 332.0 220 73.6
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 9.8e-88 327.0 204 77.0
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 9.8e-88 327.0 221 73.8
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 6.4e-87 324.3 212 74.5
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 1.6e-85 319.7 221 69.7
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 2.1e-85 319.3 221 71.0
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 3.5e-85 318.5 221 70.6
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.3e-84 316.6 221 69.2
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.7e-84 316.2 221 69.2
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 3.9e-84 315.1 221 69.7
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 5.1e-84 314.7 221 68.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.6e-84 314.3 221 69.2
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.6e-82 309.7 221 68.3
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.1e-82 309.3 221 67.9
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.1e-82 309.3 231 66.2
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.6e-82 308.5 221 67.0
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 4.7e-82 308.1 221 66.5
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.4e-81 306.6 221 67.9
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.8e-81 306.2 221 67.4
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.3e-81 305.8 221 67.0
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 3.1e-81 305.4 220 65.9
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 3.1e-81 305.4 221 67.0
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 3.1e-81 305.4 221 67.0
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 4.0e-81 305.1 221 68.8
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 4.0e-81 305.1 221 66.5
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 8.9e-81 303.9 221 66.5
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 8.9e-81 303.9 221 65.2
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 8.9e-81 303.9 221 65.6
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.2e-80 303.5 221 66.5
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.2e-80 303.5 221 67.0
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.2e-80 303.5 221 65.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.5e-80 303.1 249 61.8
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 4.4e-80 301.6 221 67.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.4e-80 301.6 221 66.1
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 5.8e-80 301.2 221 65.2
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 7.5e-80 300.8 221 65.6
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 7.5e-80 300.8 221 65.6
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 9.9e-80 300.4 221 66.5
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.3e-79 300.1 221 66.5
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.9e-79 298.9 221 65.6
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.9e-79 298.9 221 65.2
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.9e-79 298.1 221 64.3
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 6.4e-79 297.7 221 69.2
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 6.4e-79 297.7 221 66.1
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 6.4e-79 297.7 221 65.6
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 8.3e-79 297.4 221 65.6
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.4e-78 296.6 221 66.5
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.4e-78 296.6 221 65.2
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.4e-78 296.6 221 66.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.9e-78 296.2 238 64.3
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.1e-78 295.0 221 64.7
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.1e-77 292.7 222 64.4
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 6.0e-77 291.2 221 65.2
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 6.0e-77 291.2 221 64.3
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 7.8e-77 290.8 221 66.1
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.3e-76 290.0 221 63.3
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.3e-76 290.0 221 63.3
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 5.1e-76 288.1 221 62.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 5.1e-76 288.1 201 72.1
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 6.6e-76 287.7 221 65.2
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 6.6e-76 287.7 222 64.0
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.5e-75 286.6 221 64.7
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.5e-75 286.6 221 64.3
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.9e-75 286.2 221 64.3
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.5e-75 285.8 221 62.4
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 5.6e-75 284.6 221 62.9
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 5.6e-75 284.6 221 62.9
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 7.3e-75 284.3 221 63.8
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 9.6e-75 283.9 221 63.8
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.6e-74 283.1 221 62.4
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.7e-74 281.6 214 65.4
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 4.7e-74 281.6 221 62.9
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.2e-74 281.2 234 61.1
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 6.2e-74 281.2 208 63.9
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 8.1e-74 280.8 194 71.6
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.1e-73 280.4 221 61.5
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.8e-73 279.6 221 63.8
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.4e-73 279.3 226 61.9
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 6.8e-73 277.7 221 63.3
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 6.8e-73 277.7 221 62.4
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.2e-72 276.9 251 57.0
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.5e-72 276.6 221 63.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.0e-72 276.2 221 62.9
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 5.8e-72 274.6 221 62.0
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 8.4e-71 270.8 206 64.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.6e-69 266.5 221 55.7
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 2.1e-69 266.2 221 59.3
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.0e-64 249.6 201 59.2
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 2.2e-63 246.1 180 65.6
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.9e-62 243.0 221 55.2
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 7.1e-62 241.1 244 50.8
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 9.3e-62 240.7 183 66.7
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.5e-59 233.4 221 53.8
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 3.3e-59 232.3 220 52.3
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 9.6e-59 230.7 202 57.9
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 9.6e-59 230.7 202 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.1e-57 227.3 222 52.3
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.1e-57 227.3 165 65.5
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.4e-57 226.9 183 61.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 3.4e-56 222.2 108 96.3
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 4.5e-56 221.9 220 51.8
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 4.5e-56 221.9 183 60.1
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.2e-53 213.8 175 62.9
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.7e-53 212.6 107 93.5
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 6.0e-53 211.5 179 60.3
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.0e-49 198.7 226 50.4
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 4.5e-48 195.3 168 60.1
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.1e-43 180.6 222 46.4
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 2.1e-42 176.4 169 57.4
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.6e-37 158.7 188 46.8
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 6.3e-34 148.3 261 35.2
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.8e-33 146.7 309 33.0
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 5.3e-33 145.2 113 69.0
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 9.4e-30 134.4 113 62.8
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 2.1e-29 133.3 77 81.8
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.0e-28 131.0 121 55.4
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.1e-27 127.5 77 77.9
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 7.4e-27 124.8 258 34.1
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 6.3e-26 121.7 124 54.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 4.1e-25 119.0 76 69.7
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 7.7e-24 114.8 72 69.4
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.7e-21 106.3 93 58.1
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 9.1e-17 91.3 77 61.0
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.9e-14 83.6 193 29.5
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.7e-13 79.0 56 64.3
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 5.3e-09 65.5 66 51.5


User provided reference genes

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