Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25850_v3 Cicer arietinum L. HOM05D002902 ORTHO05D008465 8.8e-34 146.4 73 100.0
Ca_25849_v3 Cicer arietinum L. HOM05D002902 ORTHO05D008465 5.4e-23 110.5 69 85.5
Medtr4g111750 Medicago truncatula HOM05D002902 ORTHO05D008465 2.3e-21 105.1 67 82.1
TPR.G26792 Trifolium pratense HOM05D002902 ORTHO05D008465 1.1e-20 102.8 67 77.6
Lalb_Chr13g0302421 Lupinus albus HOM05D002902 ORTHO05D008465 7.2e-20 100.1 63 77.8
GSVIVG01022737001 Vitis vinifera HOM05D002902 ORTHO05D008465 9.5e-20 99.8 63 76.2
Lj4g0009401 Lotus japonicus HOM05D002902 ORTHO05D008465 1.2e-19 99.4 63 79.4
Ciclev10022157m.g Citrus clementina HOM05D002902 ORTHO05D008465 2.1e-19 98.6 63 74.6
arahy.Tifrunner.gnm1.ann1.BUM0G4 Arachis hypogaea HOM05D002902 ORTHO05D008465 6.1e-19 97.1 66 74.2
arahy.Tifrunner.gnm1.ann1.F2QG3S Arachis hypogaea HOM05D002902 ORTHO05D008465 6.1e-19 97.1 66 74.2
Oeu027138.3 Olea europaea HOM05D002902 ORTHO05D008465 6.1e-19 97.1 63 76.2
Lj9A432T69 Lonicera japonica HOM05D002902 ORTHO05D008465 8.0e-19 96.7 64 75.0
Migut.N02424 Erythranthe guttata HOM05D002902 ORTHO05D008465 1.0e-18 96.3 63 76.2
Cc04_g07640 Coffea canephora HOM05D002902 ORTHO05D008465 1.4e-18 95.9 57 77.2
Sed0016028 Sechium edule HOM05D002902 ORTHO05D008465 1.4e-18 95.9 72 63.9
Dinv36892 Davidia involucrata HOM05D002902 ORTHO05D008465 1.8e-18 95.5 63 69.8
VMungo1215G0298 Vigna mungo HOM05D002902 ORTHO05D008465 1.8e-18 95.5 63 74.6
Nitab4.5_0000208g0130 Nicotiana tabacum HOM05D002902 ORTHO05D008465 2.3e-18 95.1 68 70.6
QL10p023175 Quercus lobata HOM05D002902 ORTHO05D008465 3.0e-18 94.7 67 68.7
Nitab4.5_0006132g0030 Nicotiana tabacum HOM05D002902 ORTHO05D008465 4.0e-18 94.4 67 71.6
PSO478G3794 Papaver somniferum HOM05D002902 ORTHO05D008465 4.0e-18 94.4 57 77.2
Atru.chr9.728 Acer truncatum HOM05D002902 ORTHO05D008465 5.2e-18 94.0 63 69.8
CSS0029797 Camellia sinensis var. sinensis HOM05D002902 ORTHO05D008465 5.2e-18 94.0 67 67.2
Peaxi162Scf00119g00121 Petunia axillaris HOM05D002902 ORTHO05D008465 5.2e-18 94.0 67 71.6
Potri.012G058800 Populus trichocarpa HOM05D002902 ORTHO05D008465 5.2e-18 94.0 67 71.6
SalBow3G0049 Salvia bowleyana HOM05D002902 ORTHO05D008465 5.2e-18 94.0 63 76.2
Solyc12g038370.2 Solanum lycopersicum HOM05D002902 ORTHO05D008465 5.2e-18 94.0 63 69.8
Sopen12g018510 Solanum pennellii HOM05D002902 ORTHO05D008465 5.2e-18 94.0 63 69.8
Thecc.03G026800 Theobroma cacao HOM05D002902 ORTHO05D008465 5.2e-18 94.0 63 71.4
Glyma.05G014200 Glycine max HOM05D002902 ORTHO05D008465 6.8e-18 93.6 63 71.4
Phvul.003G178400 Phaseolus vulgaris HOM05D002902 ORTHO05D008465 6.8e-18 93.6 63 73.0
Manes.01G021700 Manihot esculenta HOM05D002902 ORTHO05D008465 8.9e-18 93.2 59 74.6
TWI15G0714 Tripterygium wilfordii HOM05D002902 ORTHO05D008465 8.9e-18 93.2 63 68.3
Actinidia25078 Actinidia chinensis HOM05D002902 ORTHO05D008465 1.2e-17 92.8 67 67.2
ATR0787G175 Amborella trichopoda HOM05D002902 ORTHO05D008465 1.2e-17 92.8 63 73.0
vmacro17685 Vaccinium macrocarpon HOM05D002902 ORTHO05D008465 1.2e-17 92.8 67 68.7
CsaV3_1G006450 Cucumis sativus L. HOM05D002902 ORTHO05D008465 1.5e-17 92.4 67 67.2
Hma1.2p1_0595F.1_g186050 Hydrangea macrophylla HOM05D002902 ORTHO05D008465 2.0e-17 92.0 63 73.0
MSTRG.12406 Avicennia marina HOM05D002902 ORTHO05D008465 2.6e-17 91.7 63 71.4
Psat0s3619g0160 Pisum sativum HOM05D000001 ORTHO05D011365 2.6e-17 91.7 68 76.5
CAN.G578.2 Capsicum annuum HOM05D002902 ORTHO05D008465 3.4e-17 91.3 67 65.7
MELO3C002071.2 Cucumis melo HOM05D002902 ORTHO05D008465 3.4e-17 91.3 67 64.2
Os01g0642900 Oryza sativa ssp. japonica HOM05D002902 ORTHO05D008465 3.4e-17 91.3 57 77.2
PSO017G6356 Papaver somniferum HOM05D002902 ORTHO05D008465 3.4e-17 91.3 57 75.4
CANSAT11G1420 Cannabis sativa HOM05D002902 ORTHO05D008465 4.4e-17 90.9 56 71.4
Cfa019837 Carpinus fangiana HOM05D002902 ORTHO05D008465 4.4e-17 90.9 67 62.7
CiPaw.15G125100 Carya illinoinensis HOM05D002902 ORTHO05D008465 4.4e-17 90.9 67 64.2
AT3G18580 Arabidopsis thaliana HOM05D002902 ORTHO05D008465 5.7e-17 90.5 67 67.2
CARHR093940 Cardamine hirsuta HOM05D002902 ORTHO05D008465 5.7e-17 90.5 67 67.2
AL3G31890 Arabidopsis lyrata HOM05D002902 ORTHO05D008465 7.5e-17 90.1 67 67.2
BcaB06g25906 Brassica carinata HOM05D002902 ORTHO05D008465 7.5e-17 90.1 63 68.3
BolC5t33432H Brassica oleracea HOM05D002902 ORTHO05D008465 7.5e-17 90.1 63 68.3
HPP92_021354 Vanilla planifolia HOM05D002902 ORTHO05D008465 7.5e-17 90.1 67 70.1
Aqoxy3G00373 Aquilegia oxysepala HOM05D002902 ORTHO05D008465 9.8e-17 89.7 57 71.9
BcaC09g48816 Brassica carinata HOM05D002902 ORTHO05D008465 9.8e-17 89.7 67 67.2
A01p35860 Brassica napus HOM05D002902 ORTHO05D008465 9.8e-17 89.7 63 68.3
A05p31040 Brassica napus HOM05D002902 ORTHO05D008465 9.8e-17 89.7 63 68.3
C01p45650 Brassica napus HOM05D002902 ORTHO05D008465 9.8e-17 89.7 67 67.2
BolC1t04526H Brassica oleracea HOM05D002902 ORTHO05D008465 9.8e-17 89.7 67 67.2
BraA01t03665Z Brassica rapa HOM05D002902 ORTHO05D008465 9.8e-17 89.7 63 68.3
BraA05t21946Z Brassica rapa HOM05D002902 ORTHO05D008465 9.8e-17 89.7 63 68.3
Thhalv10021489m.g Eutrema salsugineum HOM05D002902 ORTHO05D008465 9.8e-17 89.7 63 68.3
MBI16_g23745_MAGBIO Magnolia biondii HOM05D002902 ORTHO05D008465 9.8e-17 89.7 67 64.2
BcaC05g28599 Brassica carinata HOM05D002902 ORTHO05D008465 1.3e-16 89.4 57 70.2
C05p47020 Brassica napus HOM05D002902 ORTHO05D008465 1.3e-16 89.4 57 70.2
Carub.0003s1836 Capsella rubella HOM05D002902 ORTHO05D008465 1.3e-16 89.4 67 67.2
Eucgr.B00672 Eucalyptus grandis HOM05D002902 ORTHO05D008465 1.3e-16 89.4 63 69.8
MD06G1209800 Malus domestica HOM05D002902 ORTHO05D008465 1.3e-16 89.4 59 67.8
Hund02528 Selenicereus undatus HOM05D002902 ORTHO05D008465 1.3e-16 89.4 59 67.8
Aa31LG8G5440 Aethionema arabicum HOM05D002902 ORTHO05D008465 1.7e-16 89.0 63 68.3
Nn4g23687 Nelumbo nucifera HOM05D002902 ORTHO05D008465 1.7e-16 89.0 67 65.7
Prupe.5G215900 Prunus persica HOM05D002902 ORTHO05D008465 2.2e-16 88.6 66 63.6
CDE04G1152 Ceratophyllum demersum HOM05D002902 ORTHO05D008465 2.8e-16 88.2 57 73.7
ECA232G4870 Erigeron canadensis HOM05D006989 ORTHO05D008787 2.8e-16 88.2 63 66.7
Lsat_1_v5_gn_4_112141 Lactuca sativa HOM05D002902 ORTHO05D008465 2.8e-16 88.2 63 63.5
CDE03G0322 Ceratophyllum demersum HOM05D002902 ORTHO05D008465 3.7e-16 87.8 57 73.7
DCAR_011552 Daucus carota HOM05D002902 ORTHO05D008465 3.7e-16 87.8 63 68.3
RcHm_v2.0_Chr7g0184411 Rosa chinensis HOM05D002902 ORTHO05D008465 3.7e-16 87.8 63 65.1
FvH4_5g12820 Fragaria vesca HOM05D002902 ORTHO05D008465 4.9e-16 87.4 72 58.3
unitig_22.g5685 Utricularia gibba HOM05D002902 ORTHO05D008465 4.9e-16 87.4 63 71.4
MD14G1220600 Malus domestica HOM05D002902 ORTHO05D008465 6.3e-16 87.0 59 62.7
Ah.11g047210 Amaranthus hybridus HOM05D002902 ORTHO05D008465 8.3e-16 86.7 59 66.1
Gohir.D07G045000 Gossypium hirsutum HOM05D002902 ORTHO05D008465 8.3e-16 86.7 63 65.1
Gorai.001G048000 Gossypium raimondii HOM05D002902 ORTHO05D008465 8.3e-16 86.7 63 65.1
THA.LOC104803364 Tarenaya hassleriana HOM05D002902 ORTHO05D008465 1.1e-15 86.3 63 66.7
THA.LOC104821851 Tarenaya hassleriana HOM05D002902 ORTHO05D008465 1.1e-15 86.3 57 70.2
HanXRQChr16g0502061 Helianthus annuus HOM05D002902 ORTHO05D008465 1.4e-15 85.9 63 66.7
Sp3g16660 Schrenkiella parvula HOM05D002902 ORTHO05D008465 1.8e-15 85.5 63 65.1
EL10Ac5g11239 Beta vulgaris HOM05D002902 ORTHO05D008465 2.4e-15 85.1 59 61.0
Gohir.A07G040800 Gossypium hirsutum HOM05D002902 ORTHO05D008465 2.4e-15 85.1 63 61.9
DCAR_029838 Daucus carota HOM05D002902 ORTHO05D008465 5.4e-15 84.0 61 68.9
PGR083G0096 Punica granatum HOM05D002902 ORTHO05D008465 7.0e-15 83.6 63 61.9
AUR62032179 Chenopodium quinoa HOM05D002902 ORTHO05D008465 1.2e-14 82.8 59 59.3
Duzib205G0631 Durio zibethinus HOM05D002902 ORTHO05D008465 1.2e-14 82.8 63 60.3
Cpa.g.sc13.67 Carica papaya HOM05D002902 ORTHO05D008465 1.6e-14 82.4 67 62.7
SGA_v2.0_scaffold8G04329 Striga asiatica HOM05D000495 ORTHO05D008465 2.7e-14 81.6 51 74.5
AUR62036939 Chenopodium quinoa HOM05D002902 ORTHO05D008465 1.3e-13 79.3 59 55.9
Zm00001eb158710 Zea mays HOM05D002902 ORTHO05D008465 1.3e-13 79.3 72 58.3
Pp3c16_13590 Physcomitrium patens HOM05D002902 ORTHO05D008465 3.3e-12 74.7 60 53.3
SEGI_38419 Sequoiadendron giganteum HOM05D002902 ORTHO05D008465 3.3e-12 74.7 57 56.1
Pp3c5_8750 Physcomitrium patens HOM05D002902 ORTHO05D008465 4.7e-11 70.9 60 51.7
Mapoly0132s0028 Marchantia polymorpha HOM05D002902 ORTHO05D008465 8.0e-11 70.1 57 54.4
Pp3c6_15160 Physcomitrium patens HOM05D002902 ORTHO05D008465 1.4e-10 69.3 57 52.6
HPP92_021349 Vanilla planifolia HOM05D002902 ORTHO05D008465 3.4e-09 64.7 34 88.2
Psat5g107400 Pisum sativum HOM05D002902 ORTHO05D008465 4.4e-09 64.3 47 72.3
Haze_18587 Corylus avellana HOM05D002902 ORTHO05D008465 5.8e-09 63.9 34 76.5
Sabra12G0041200 Salix brachista HOM05D002902 ORTHO05D008465 7.5e-09 63.5 34 85.3
TAR371G1106 Trochodendron aralioides HOM05D002902 ORTHO05D008465 1.7e-08 62.4 34 79.4
Aqoxy2G02858 Aquilegia oxysepala HOM05D002902 ORTHO05D008934 5.4e-07 57.4 57 45.6
SMO119G0378 Selaginella moellendorffii HOM05D002902 ORTHO05D008465 2.0e-06 55.5 53 47.2
FvH4_4g00740 Fragaria vesca HOM05D002902 ORTHO05D008934 2.7e-06 55.1 67 37.3
FvH4_6g07030 Fragaria vesca HOM05D002902 ORTHO05D008934 2.7e-06 55.1 67 37.3
FAN14G0019 Fragaria x ananassa HOM05D002608 ORTHO05D003838 2.7e-06 55.1 67 37.3
PSO302G0075 Papaver somniferum HOM05D002902 ORTHO05D008934 2.7e-06 55.1 57 42.1
Nn4g25698 Nelumbo nucifera HOM05D002902 ORTHO05D008934 3.5e-06 54.7 57 42.1
SHI18084 Sapria himalayana HOM05D002902 ORTHO05D008934 3.5e-06 54.7 57 43.9
TWI56G0784 Tripterygium wilfordii HOM05D002902 ORTHO05D008934 3.5e-06 54.7 57 40.4
CiPaw.07G025600 Carya illinoinensis HOM05D002902 ORTHO05D008934 4.6e-06 54.3 57 43.9
ClCG03G017590 Citrullus lanatus HOM05D002902 ORTHO05D008934 4.6e-06 54.3 57 38.6
Ciclev10002449m.g Citrus clementina HOM05D002902 ORTHO05D008934 4.6e-06 54.3 58 39.7
COL.COLO4_03802 Corchorus olitorius HOM05D002902 ORTHO05D008934 4.6e-06 54.3 68 41.2
Lj9P203T13 Lonicera japonica HOM05D002902 ORTHO05D008934 4.6e-06 54.3 58 43.1
HPP92_013965 Vanilla planifolia HOM05D002902 ORTHO05D008934 4.6e-06 54.3 57 42.1
CSS0009700 Camellia sinensis var. sinensis HOM05D002902 ORTHO05D009851 6.0e-06 53.9 57 42.1
CSS0033355 Camellia sinensis var. sinensis HOM05D002902 ORTHO05D009851 6.0e-06 53.9 57 42.1
Haze_04098 Corylus avellana HOM05D002902 ORTHO05D008934 6.0e-06 53.9 57 40.4
Hma1.2p1_1320F.1_g275300 Hydrangea macrophylla HOM05D002902 ORTHO05D008934 6.0e-06 53.9 57 40.4
MD04G1196700 Malus domestica HOM05D002902 ORTHO05D008934 6.0e-06 53.9 57 40.4
TWI81G1091 Tripterygium wilfordii HOM05D002902 ORTHO05D008465 6.0e-06 53.9 36 61.1
ATR0743G103 Amborella trichopoda HOM05D002902 ORTHO05D008934 7.8e-06 53.5 57 38.6
QL03p017844 Quercus lobata HOM05D002902 ORTHO05D008934 7.8e-06 53.5 57 40.4
QL93p2009_0056 Quercus lobata HOM05D002902 ORTHO05D008934 7.8e-06 53.5 57 40.4
Rhsim11G0092300 Rhododendron simsii HOM05D002902 ORTHO05D008934 7.8e-06 53.5 57 38.6
Sed0018825 Sechium edule HOM05D002902 ORTHO05D008934 7.8e-06 53.5 57 40.4
TAR365G0680 Trochodendron aralioides HOM05D002902 ORTHO05D008934 7.8e-06 53.5 57 38.6


User provided reference genes

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