Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.5e-93 346.3 192 100.0
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 3.0e-41 172.6 177 59.3
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 9.7e-40 167.5 176 59.7
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 1.3e-39 167.2 186 59.7
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 8.2e-39 164.5 177 57.1
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 5.3e-38 161.8 177 56.5
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 2.9e-36 156.0 187 56.7
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 1.2e-34 150.6 181 50.8
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 6.3e-31 138.3 186 48.4
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 2.4e-30 136.3 188 50.0
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 5.3e-30 135.2 179 49.2
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 2.7e-29 132.9 186 50.5
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 1.0e-28 131.0 185 51.4
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 1.7e-28 130.2 192 49.0
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 5.0e-28 128.6 180 47.8
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 2.5e-27 126.3 180 46.1
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 3.2e-27 125.9 226 44.7
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 9.4e-27 124.4 188 51.1
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 1.6e-26 123.6 187 49.2
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 1.0e-25 120.9 183 46.4
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 1.0e-25 120.9 176 45.5
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 1.0e-25 120.9 184 47.8
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 2.3e-25 119.8 177 47.5
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 4.0e-25 119.0 190 46.8
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 6.8e-25 118.2 187 47.6
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 1.2e-24 117.5 178 47.2
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 1.2e-24 117.5 192 45.8
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 1.5e-24 117.1 198 41.9
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 4.4e-24 115.5 196 40.8
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 4.4e-24 115.5 196 40.8
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 5.7e-24 115.2 185 44.3
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 9.8e-24 114.4 188 45.7
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.7e-23 113.6 185 46.5
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 2.8e-23 112.8 183 46.4
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 2.8e-23 112.8 177 47.5
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 2.8e-23 112.8 188 43.6
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 3.7e-23 112.5 181 45.9
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 6.3e-23 111.7 197 41.6
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.1e-22 110.9 181 45.9
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 2.4e-22 109.8 190 43.2
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 5.4e-22 108.6 210 44.8
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 5.4e-22 108.6 206 37.9
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 5.4e-22 108.6 191 44.0
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 5.4e-22 108.6 200 38.0
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 2.0e-21 106.7 187 43.3
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 2.0e-21 106.7 206 38.8
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 2.7e-21 106.3 206 37.9
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 1.0e-20 104.4 187 45.5
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.3e-20 104.0 182 43.4
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 1.7e-20 103.6 194 43.3
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 3.8e-20 102.4 197 40.1
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 8.6e-20 101.3 202 40.6
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 1.5e-19 100.5 197 40.1
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.5e-19 100.5 193 37.8
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 2.5e-19 99.8 174 43.7
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 4.2e-19 99.0 187 42.2
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 7.2e-19 98.2 162 45.7
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 9.5e-19 97.8 199 41.7
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 4.7e-18 95.5 179 41.3
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 4.7e-18 95.5 177 38.4
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 4.7e-18 95.5 181 43.1
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 4.7e-18 95.5 169 43.2
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 8.0e-18 94.7 174 39.7
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 2.3e-17 93.2 181 40.3
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 4.0e-17 92.4 176 39.8
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 6.8e-17 91.7 192 40.1
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 6.8e-17 91.7 183 39.9
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 8.9e-17 91.3 179 39.1
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.2e-16 90.9 195 40.0
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.7e-15 87.0 157 42.7
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 8.3e-15 84.7 197 36.0
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 1.1e-14 84.3 182 39.6
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 5.4e-14 82.0 197 40.1
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 5.4e-14 82.0 137 44.5
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 5.4e-14 82.0 170 42.4
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 1.2e-13 80.9 181 38.1
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 1.6e-13 80.5 184 37.5
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 2.7e-13 79.7 175 35.4
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 4.5e-13 79.0 206 37.4
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 7.8e-13 78.2 183 37.7
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 7.8e-13 78.2 177 34.5
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 1.3e-12 77.4 147 42.9
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 1.3e-12 77.4 189 37.0
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 2.3e-12 76.6 172 37.2
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.1e-11 74.3 214 37.4
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 5.6e-11 72.0 222 32.9
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 4.7e-10 68.9 213 34.3
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 8.9e-09 64.7 157 36.9
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.3e-07 60.8 82 46.3
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 2.2e-07 60.1 133 33.8


User provided reference genes

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