Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 3.4e-239 831.2 419 100.0
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.3e-222 776.2 420 93.1
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.2e-221 771.5 420 92.6
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-220 768.5 424 92.2
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.1e-218 763.1 425 91.3
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.6e-210 735.3 419 87.6
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 3.3e-210 734.9 425 88.2
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 6.3e-209 730.7 426 87.8
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 5.3e-208 727.6 426 86.6
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.4e-203 713.0 429 85.3
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.8e-201 705.3 420 85.0
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.8e-200 702.6 394 86.8
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 4.5e-199 698.0 395 86.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.9e-197 692.6 420 83.6
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.0e-195 686.8 428 80.6
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 4.0e-195 684.9 428 80.4
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.0e-195 684.9 428 80.8
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.2e-194 683.3 428 79.9
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.2e-194 683.3 420 81.0
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.2e-194 683.3 424 80.2
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.0e-194 682.6 420 80.7
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.0e-194 682.6 431 80.0
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 3.3e-194 681.8 423 81.1
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 5.7e-194 681.0 424 80.9
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.7e-193 679.5 429 80.2
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.1e-192 675.2 397 83.9
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.1e-192 675.2 420 80.2
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 7.0e-192 674.1 424 79.2
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.6e-191 672.9 420 80.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 2.0e-191 672.5 424 79.2
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.7e-191 672.2 420 79.8
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.9e-191 671.0 418 80.4
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 5.9e-191 671.0 426 79.8
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.8e-190 668.3 424 79.7
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.5e-190 667.5 389 84.6
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.9e-189 666.0 425 78.8
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.2e-189 665.2 416 79.8
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 5.5e-189 664.5 391 84.7
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 7.2e-189 664.1 429 78.3
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 7.2e-189 664.1 420 79.3
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.2e-188 663.3 392 84.4
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.2e-188 663.3 423 79.2
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.7e-188 662.1 406 82.0
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.7e-188 662.1 402 81.1
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 4.7e-188 661.4 386 84.2
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 6.1e-188 661.0 392 84.2
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 8.0e-188 660.6 424 79.5
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.0e-187 660.2 423 79.0
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.8e-187 659.4 412 80.1
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.0e-187 658.3 431 77.5
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.5e-186 656.4 411 79.8
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 7.5e-186 654.1 392 82.4
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.4e-184 649.8 408 79.7
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.2e-183 646.7 423 79.2
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.5e-183 644.8 420 76.7
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.9e-183 644.4 423 78.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 6.5e-182 641.0 400 79.8
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.5e-181 639.8 420 76.9
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.5e-181 639.0 421 76.5
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 5.5e-181 637.9 423 76.6
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 7.2e-181 637.5 433 75.1
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 7.2e-181 637.5 422 76.5
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.2e-180 636.7 422 75.8
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.1e-180 636.0 403 78.9
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.1e-180 636.0 392 78.8
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.6e-180 635.2 432 74.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.6e-180 635.2 418 77.0
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 4.7e-180 634.8 394 81.2
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 6.1e-180 634.4 423 76.1
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 6.1e-180 634.4 424 75.7
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 8.0e-180 634.0 429 76.7
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 8.0e-180 634.0 424 76.2
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 8.0e-180 634.0 392 79.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.4e-179 633.3 422 76.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.8e-179 632.9 431 74.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 4.0e-179 631.7 431 74.7
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 5.2e-179 631.3 423 75.9
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.8e-179 630.9 431 74.9
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.2e-178 630.2 429 74.6
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.4e-178 628.6 392 78.6
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 4.4e-178 628.2 423 75.7
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 5.7e-178 627.9 418 77.8
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.4e-176 622.5 392 78.6
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 3.1e-176 622.1 408 77.2
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 7.0e-176 620.9 421 74.6
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 7.0e-176 620.9 421 74.6
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 7.0e-176 620.9 421 74.6
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 7.0e-176 620.9 423 76.6
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 9.2e-176 620.5 424 74.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.2e-175 620.2 401 78.3
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 2.7e-175 619.0 424 73.8
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.5e-175 618.6 427 74.5
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.5e-175 618.2 427 73.5
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.3e-174 616.7 426 74.2
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.7e-174 616.3 427 73.3
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.3e-174 615.9 424 74.3
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.3e-174 615.9 424 74.3
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 2.9e-174 615.5 424 74.1
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.6e-174 614.0 421 73.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.5e-173 613.2 378 81.0
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.5e-173 612.5 422 73.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 4.3e-173 611.7 422 74.2
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 4.3e-173 611.7 409 77.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 9.5e-173 610.5 402 78.4
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.2e-172 610.1 417 73.6
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.6e-172 608.6 409 75.8
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 4.7e-172 608.2 424 74.1
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.1e-172 607.8 409 75.6
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 8.0e-172 607.4 376 81.6
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.0e-171 605.1 403 75.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.5e-170 603.2 392 76.3
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 5.7e-170 601.3 376 79.0
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.3e-169 600.1 380 77.6
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.9e-169 599.0 392 76.8
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 3.7e-169 598.6 408 74.0
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.9e-169 598.2 376 78.5
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.2e-167 593.6 408 75.5
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.6e-167 593.2 473 66.6
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.7e-167 592.4 421 73.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 7.8e-167 590.9 424 71.9
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.0e-166 590.5 371 84.6
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.3e-166 590.1 419 72.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.9e-165 586.3 335 87.2
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 5.6e-165 584.7 411 74.2
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 9.5e-165 583.9 354 81.9
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.5e-162 576.6 427 69.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.2e-161 572.8 379 76.8
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.4e-160 570.1 417 69.8
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-160 568.2 422 70.6
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.2e-159 567.0 450 67.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.6e-156 555.4 438 68.9
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.8e-154 548.1 432 71.1
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.1e-152 543.9 322 82.9
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.4e-152 543.5 374 70.9
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.0e-150 535.8 315 84.1
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 4.7e-148 528.5 375 69.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 6.2e-148 528.1 376 69.1
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 8.9e-147 524.2 416 68.0
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 7.6e-146 521.2 421 67.5
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.2e-143 513.8 409 67.7
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.0e-142 510.8 405 64.7
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.1e-141 507.3 346 73.1
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.6e-140 503.4 399 64.4
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.7e-135 486.1 424 59.4
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.9e-134 482.3 408 62.0
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 5.1e-134 481.9 393 63.4
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.8e-129 465.7 332 72.0
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.9e-123 444.9 364 65.1
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 7.4e-117 424.9 241 86.7
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.8e-115 420.2 335 66.6
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.6e-106 389.8 271 71.6
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.9e-105 386.3 231 81.8
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.3e-99 365.5 211 86.7
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.0e-97 359.0 408 48.5
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 3.4e-90 336.3 411 47.4
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.9e-88 330.5 390 49.0
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 6.3e-84 315.5 273 57.9
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.5e-82 309.3 346 54.3
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 6.1e-79 298.9 196 75.0
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.0e-70 269.6 151 85.4
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.9e-64 250.8 222 60.4
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.4e-62 244.6 320 43.4
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.3e-62 243.8 302 46.4
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.9e-57 226.9 120 90.0
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.5e-56 224.6 219 54.8
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.4e-54 218.0 308 40.6
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.5e-53 214.5 424 38.9
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.0e-49 199.5 182 58.8
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 4.4e-37 159.8 124 67.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 1.6e-34 151.4 118 65.3
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.1e-30 138.7 75 88.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.3e-24 116.7 69 79.7
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 4.7e-23 113.2 61 85.2
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.8e-20 103.6 75 66.7
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.2e-19 100.5 145 42.1
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 7.1e-19 99.4 54 81.5
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 4.3e-16 90.1 60 75.0
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 9.6e-16 89.0 118 45.8
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.1e-14 85.5 84 51.2
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.4e-14 85.1 74 56.8
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.2e-13 82.0 148 39.9
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 4.8e-07 60.1 55 58.2
TPR.G39825 Trifolium pratense HOM05D003740 ORTHO05D411371 4.8e-07 60.1 33 84.8
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 4.0e-06 57.0 35 71.4


User provided reference genes

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