Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-228 795.8 408 100.0
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.6e-185 652.9 409 85.3
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 5.8e-183 644.4 409 82.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 8.3e-174 614.0 406 80.0
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.6e-172 609.8 406 79.8
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 7.8e-172 607.4 406 79.3
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 3.9e-171 605.1 405 80.0
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.0e-167 592.8 385 81.0
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 1.2e-159 567.0 370 80.8
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.2e-151 540.4 369 76.4
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.3e-150 537.0 372 74.2
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.2e-150 536.2 369 75.6
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 2.2e-150 536.2 369 74.5
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 6.4e-150 534.6 369 74.8
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.1e-149 533.9 389 71.5
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.4e-149 533.5 369 74.3
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 4.2e-149 531.9 388 71.4
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 7.1e-149 531.2 375 73.9
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 1.6e-148 530.0 369 74.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 2.7e-148 529.3 372 73.4
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 6.0e-148 528.1 369 74.5
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 1.0e-147 527.3 376 73.4
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 1.8e-147 526.6 369 73.2
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.7e-147 524.6 372 73.1
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 6.7e-147 524.6 372 73.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.9e-146 523.1 372 74.7
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.6e-145 520.0 384 71.9
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.8e-145 519.2 372 72.3
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 3.7e-145 518.8 370 71.9
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 3.7e-145 518.8 387 69.5
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 4.8e-145 518.5 373 71.3
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 8.1e-145 517.7 362 74.9
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.1e-144 517.3 387 70.5
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.1e-144 517.3 394 70.6
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 2.4e-144 516.2 383 72.3
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 9.0e-144 514.2 347 76.7
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 7.6e-143 511.1 370 73.0
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.3e-142 510.4 380 70.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.9e-142 509.2 371 72.5
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.9e-142 509.2 382 70.4
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 3.8e-142 508.8 433 64.4
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 4.9e-142 508.4 369 72.1
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 6.4e-142 508.1 370 71.9
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.9e-141 506.5 369 72.1
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.9e-141 506.5 369 71.5
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 2.5e-141 506.1 371 72.0
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 3.2e-141 505.8 372 70.7
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 4.2e-141 505.4 384 68.5
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 7.1e-141 504.6 370 72.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 7.1e-141 504.6 370 72.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 9.3e-141 504.2 369 71.8
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.2e-140 503.8 380 69.5
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.6e-140 503.4 371 72.2
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.6e-140 503.4 364 71.7
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.7e-140 502.7 371 72.0
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.7e-140 502.7 371 72.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.5e-140 502.3 369 71.8
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.6e-140 501.9 369 71.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.6e-140 501.9 371 72.0
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.6e-140 501.9 369 71.8
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 6.0e-140 501.5 363 72.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.8e-139 500.0 381 70.9
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.0e-139 499.2 369 69.9
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.7e-139 497.7 398 66.1
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 8.7e-139 497.7 351 72.4
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.1e-138 497.3 369 69.6
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 1.9e-138 496.5 372 69.4
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 4.3e-138 495.4 397 69.0
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 7.4e-138 494.6 369 68.8
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.3e-137 493.8 369 71.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.1e-137 493.0 351 72.9
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 4.8e-137 491.9 369 71.3
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.0e-136 488.8 345 73.0
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 3.8e-134 482.3 336 74.1
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 4.9e-134 481.9 345 72.5
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 8.4e-134 481.1 369 68.3
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 2.5e-133 479.6 347 72.3
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 3.2e-133 479.2 345 71.9
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 4.2e-133 478.8 390 65.4
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.2e-132 477.2 414 62.3
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 4.6e-132 475.3 397 67.0
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 3.9e-131 472.2 387 64.3
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 5.1e-131 471.9 347 68.9
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.1e-130 470.7 339 73.5
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.3e-130 469.2 336 72.6
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 8.2e-129 464.5 387 65.1
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 1.7e-126 456.8 369 67.5
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 7.2e-125 451.4 341 69.5
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 4.6e-124 448.7 374 67.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.9e-123 445.7 321 73.5
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 3.9e-123 445.7 323 72.4
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.0e-122 443.4 364 65.9
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.3e-121 440.7 316 71.2
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 5.3e-120 435.3 314 72.0
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 6.9e-120 434.9 314 72.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.9e-120 434.9 349 63.9
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.0e-115 421.0 380 62.4
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.0e-115 419.5 363 63.1
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.7e-113 413.7 251 86.5
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 7.2e-109 398.3 348 60.3
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.4e-104 383.3 360 56.1
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.9e-102 376.3 368 56.2
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 8.0e-100 368.2 276 71.4
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 3.0e-99 366.3 289 65.4
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 5.5e-93 345.5 255 72.5
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.4e-80 303.5 339 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 8.9e-75 285.0 264 56.8
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 3.7e-73 279.6 340 47.6
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.1e-72 278.1 226 65.9
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.9e-72 277.3 342 48.0
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 9.2e-72 275.0 221 65.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 9.5e-69 265.0 254 57.9
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.3e-67 260.4 267 54.7
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.4e-64 250.4 392 42.9
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 3.5e-63 246.5 201 66.2
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.3e-54 218.0 185 63.2
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.6e-53 211.8 320 42.8
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 6.2e-52 209.1 144 72.2
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 4.9e-49 199.5 194 56.7
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 4.8e-44 183.0 114 81.6
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.2e-41 174.1 165 53.3
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.4e-40 170.6 123 67.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 2.7e-39 167.2 276 42.4
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 6.6e-38 162.5 110 70.0
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 9.0e-35 152.1 299 35.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 1.7e-33 147.9 140 61.4
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 6.4e-33 146.0 101 80.2
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.8e-30 137.9 315 31.7
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.1e-29 135.2 81 84.0
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 3.7e-28 130.2 295 33.2
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.7e-23 114.0 122 52.5
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.2e-18 98.6 70 71.4
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.5e-18 98.2 54 83.3
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.6e-18 97.4 111 51.4
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.4e-18 97.1 88 62.5
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-17 94.0 59 83.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.5e-17 92.8 62 72.6
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 7.9e-15 85.9 55 74.5
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.0e-14 85.5 143 39.9
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.1e-11 73.9 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.7e-09 68.2 73 46.6
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 7.9e-07 59.3 67 55.2


User provided reference genes

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